If using the targeted panel, and GC correction and PON are not enabled. How does the control freec tool calculate the baseline?
Does it take all regions covered in all chromosomes and take the median as baseline or is there an alternative way to calculate the baseline?
If using the targeted panel, and GC correction and PON are not enabled. How does the control freec tool calculate the baseline?
Does it take all regions covered in all chromosomes and take the median as baseline or is there an alternative way to calculate the baseline?