input_data.csv

gene,PT_locus_tag,ND_locus_tag,start,end,PT8465,ND6401,sector,PT8465_R1,PT8465_R2,PT8465_R3,ND6401_R1,ND6401_R2,ND6401_R3,Annotation,function_
argH,NA,gene-L1A16_RS00550,108663,109505,0,1,accessory,0,0,0,75.1279,76.3447,84.1212,argininosuccinate lyase,Amino Acid metabolism and transport
L1A19_RS00590,gene-L1A19_RS00590,NA,115879,116217,1,0,accessory,15.9126,11.9248,5.51409,0,0,0,cysteine peptidase family C39 domain-containing protein,Defense mechanism
L1A19_RS00600,gene-L1A19_RS00600,NA,116844,117056,1,0,accessory,10.7271,29.5512,18.8997,0,0,0,hypothetical protein,"No annotation - Protein had a hit in the EggNOG database, but the function is not annotated"
L1A16_RS05110,NA,gene-L1A16_RS05110,1023865,1024038,0,1,accessory,0,0,0,23.1006,13.8373,74.7565,hypothetical protein,"No annotation - Protein had a hit in the EggNOG database, but the function is not annotated"
L1A16_RS05115,NA,gene-L1A16_RS05115,1024035,1024814,0,1,accessory,0,0,0,3.63164,1.53986,4.29551,replication initiator protein A,Function unknown
dcm,NA,gene-L1A16_RS05120,1024913,1026271,0,1,accessory,0,0,0,3.39318,3.29117,5.43098,DNA (cytosine-5-)-methyltransferase,Coenzyme metabolism
L1A16_RS05125,NA,gene-L1A16_RS05125,1026255,1026704,0,1,accessory,0,0,0,5.51479,5.21415,9.94219,hypothetical protein,"No annotation - Protein had a hit in the EggNOG database, but the function is not annotated"
L1A16_RS05140,NA,gene-L1A16_RS05140,1027326,1027913,0,1,accessory,0,0,0,3.71108,4.15844,4.43353,type II CAAX endopeptidase family protein,Function unknown
L1A16_RS05145,NA,gene-L1A16_RS05145,1027987,1028631,0,1,accessory,0,0,0,21.0244,27.7208,28.2343,type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein,Transcription
L1A16_RS05150,NA,gene-L1A16_RS05150,1028631,1029467,0,1,accessory,0,0,0,21.8845,23.6357,17.5755,nucleotidyl transferase AbiEii/AbiGii toxin family protein,Function unknown
L1A16_RS05165,NA,gene-L1A16_RS05165,1030527,1032404,0,1,accessory,0,0,0,10.5343,6.26634,16.5863,type IV secretory system conjugative DNA transfer family protein,Intracellular trafficing and secretion
L1A16_RS05170,NA,gene-L1A16_RS05170,1032425,1032667,0,1,accessory,0,0,0,105.226,45.9597,101.823,hypothetical protein,"No annotation - Protein had a hit in the EggNOG database, but the function is not annotated"
L1A16_RS05175,NA,gene-L1A16_RS05175,1032684,1033538,0,1,accessory,0,0,0,19.2674,14.6139,34.9626,conjugal transfer protein TrbL,Function unknown
L1A16_RS05180,NA,gene-L1A16_RS05180,1033592,1033951,0,1,accessory,0,0,0,53.4765,70.6895,46.1085,PrgI family protein,Function unknown
L1A16_RS05185,NA,gene-L1A16_RS05185,1033902,1036259,0,1,accessory,0,0,0,38.7905,35.683,47.793,hypothetical protein,Intracellular trafficing and secretion
L1A16_RS05190,NA,gene-L1A16_RS05190,1036271,1039084,0,1,accessory,0,0,0,28.5094,27.8868,41.2713,phage tail tip lysozyme,Cell wall/membrane/envelop biogenesis
IntTn,NA,NA,1036274,1037491,0,1,accessory,0,0,0,21.8848,22.124,18.166,Transposase from transposon Tn916,Replication and repair
mobT,NA,gene-L1A16_RS05215,1041983,1043185,0,1,accessory,0,0,0,0.476557,1.09426,0.635023,MobT family relaxase,Transcription
ermB,NA,gene-L1A16_RS05230,1043658,1044395,0,1,accessory,0,0,0,424.6,378.054,416.856,23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B),Translation
L1A16_RS05240,NA,gene-L1A16_RS05240,1046079,1046300,0,1,accessory,0,0,0,1.77993,1.86582,30.8333,hypothetical protein,Function unknown
L1A16_RS05245,NA,gene-L1A16_RS05245,1046417,1046914,0,1,accessory,0,0,0,1.22086,1.09695,3.02124,antirestriction protein ArdA,Function unknown
L1A16_RS05250,NA,gene-L1A16_RS05250,1047003,1047395,0,1,accessory,0,0,0,1.05865,0.317066,5.23963,conjugal transfer protein,Function unknown
L1A16_RS05255,NA,gene-L1A16_RS05255,1047379,1049826,0,1,accessory,0,0,0,0.678907,0.907634,1.79621,ATP-binding protein,Function unknown
L1A16_RS05260,NA,gene-L1A16_RS05260,1049829,1052012,0,1,accessory,0,0,0,0.413746,0.234439,0.387418,membrane protein,Function unknown
L1A16_RS05265,NA,gene-L1A16_RS05265,1052009,1053010,0,1,accessory,0,0,0,0.402623,0.211026,0.843079,bifunctional lysozyme/C40 family peptidase,Cell wall/membrane/envelop biogenesis
L1A16_RS05270,NA,gene-L1A16_RS05270,1053007,1053942,0,1,accessory,0,0,0,0.598988,0.363517,0.210043,conjugal transfer protein,Function unknown
tetM,NA,gene-L1A16_RS05280,1054319,1056238,0,1,accessory,0,0,0,20.1633,18.2312,18.1536,tetracycline resistance ribosomal protection protein Tet(M),Translation
L1A16_RS05285,NA,gene-L1A16_RS05285,1056357,1056524,0,1,accessory,0,0,0,154.58,209.915,149.805,cysteine-rich KTR domain-containing protein,Function unknown
L1A16_RS05290,NA,gene-L1A16_RS05290,1056584,1056937,0,1,accessory,0,0,0,10.6052,15.0406,9.42111,XRE family transcriptional regulator;helix-turn-helix transcriptional regulator,Transcription
L1A16_RS05295,NA,gene-L1A16_RS05295,1057442,1057864,0,1,accessory,0,0,0,1.12508,0.524167,0.166578,sigma-70 family RNA polymerase sigma factor,Transcription
L1A16_RS05310,NA,gene-L1A16_RS05310,1058548,1058751,0,1,accessory,0,0,0,4.61267,9.67051,43.0254,excisionase,Function unknown
L1A16_RS05315,NA,gene-L1A16_RS05315,1058833,1060050,0,1,accessory,0,0,0,14.0082,13.5366,12.3548,tyrosine-type recombinase/integrase,Replication and repair
L1A16_RS05330,NA,gene-L1A16_RS05330,1063432,1063842,0,1,accessory,0,0,0,5.37308,1.97132,0.357987,thrombospondin type 3 repeat-containing protein,"No annotation - Protein had a hit in the EggNOG database, but the function is not annotated"
L1A16_RS05335,NA,gene-L1A16_RS05335,1063890,1070102,0,1,accessory,0,0,0,0.568836,0.448163,0.743502,SNF2-related protein,Replication and repair
L1A16_RS05340,NA,gene-L1A16_RS05340,1070177,1070461,0,1,accessory,0,0,0,24.4327,53.5517,2.95974,DUF5962 family protein,"No annotation - Protein had a hit in the EggNOG database, but the function is not annotated"
L1A16_RS05345,NA,gene-L1A16_RS05345,1070475,1070771,0,1,accessory,0,0,0,206.543,194.626,214.259,DUF5966 family protein,"No annotation - Protein had a hit in the EggNOG database, but the function is not annotated"
L1A16_RS05355,NA,gene-L1A16_RS05355,1071142,1071783,0,1,accessory,0,0,0,2.04129,1.67713,2.49952,hypothetical protein,"No annotation - Protein had a hit in the EggNOG database, but the function is not annotated"
L1A16_RS05360,NA,gene-L1A16_RS05360,1071793,1072878,0,1,accessory,0,0,0,0.879552,0.189822,2.24063,toprim domain-containing protein,Replication and repair
L1A16_RS05365,NA,gene-L1A16_RS05365,1072929,1073162,0,1,accessory,0,0,0,16.1238,46.096,42.9707,DUF5965 family protein,"No annotation - Protein had a hit in the EggNOG database, but the function is not annotated"
L1A16_RS05370,NA,gene-L1A16_RS05370,1073159,1073542,0,1,accessory,0,0,0,22.9178,14.7187,10.753,DUF5945 family protein,"No annotation - Protein had a hit in the EggNOG database, but the function is not annotated"
cat,NA,NA,1073389,1074039,0,1,accessory,0,0,0,288.778,318.22,222.01,Chloramphenicol acetyltransferase,Defense mechanism
pezA,NA,gene-L1A16_RS05380,1073920,1074396,0,1,accessory,0,0,0,56.5913,64.5152,73.124,type II toxin-antitoxin system antitoxin PezA,Transcription
L1A16_RS05385,NA,gene-L1A16_RS05385,1074396,1075154,0,1,accessory,2.62294,1.46864,1.1835,63.4778,58.3903,51.125,type II toxin-antitoxin system toxin PezT,"Post-translational modification, protein turnover, chaperone functions"
L1A16_RS05390,NA,gene-L1A16_RS05390,1075630,1076418,0,1,accessory,0,0,0,82.2133,89.2929,62.1805,hypothetical protein,"No annotation - Protein had a hit in the EggNOG database, but the function is not annotated"
L1A16_RS05395,NA,gene-L1A16_RS05395,1076657,1076905,0,1,accessory,0,0,0,711.564,1045.91,474.087,hypothetical protein,"Post-translational modification, protein turnover, chaperone functions"
L1A16_RS05405,NA,gene-L1A16_RS05405,1078591,1079514,0,1,accessory,0,0,0,3.97879,3.76716,3.63431,protein rep,Replication and repair
L1A16_RS05415,NA,gene-L1A16_RS05415,1080816,1081271,0,1,accessory,0,0,0,0.734885,0.11005,0.559572,hypothetical protein,"No annotation - Protein had a hit in the EggNOG database, but the function is not annotated"
L1A16_RS05425,NA,gene-L1A16_RS05425,1082023,1082781,0,1,accessory,7.15632,6.68625,4.8819,80.4461,70.4909,70.745,type II toxin-antitoxin system toxin PezT,"Post-translational modification, protein turnover, chaperone functions"
L1A16_RS05430,NA,gene-L1A16_RS05430,1083045,1083728,0,1,accessory,0,0,0,34.0345,34.9456,32.4036,LexA family transcriptional regulator,Transcription
L1A16_RS05435,NA,gene-L1A16_RS05435,1083731,1085146,0,1,accessory,0,0,0,42.3073,30.7001,41.9665,Y-family DNA polymerase,Replication and repair
L1A16_RS05440,NA,gene-L1A16_RS05440,1085143,1085508,0,1,accessory,0,0,0,17.7114,15.6346,11.9247,hypothetical protein,"No annotation - Protein had a hit in the EggNOG database, but the function is not annotated"
L1A16_RS05445,NA,gene-L1A16_RS05445,1085498,1085788,0,1,accessory,0,0,0,56.4909,56.1002,58.1073,DUF5960 family protein,"No annotation - Protein had a hit in the EggNOG database, but the function is not annotated"
L1A16_RS05450,NA,gene-L1A16_RS05450,1086083,1086439,0,1,accessory,0,0,0,3.63809,0.423739,2.42392,SAG1252 family conjugative relaxosome accessory protein,"No annotation - Protein had a hit in the EggNOG database, but the function is not annotated"
L1A16_RS05455,NA,gene-L1A16_RS05455,1086444,1086809,0,1,accessory,0,0,0,3.54229,2.14976,4.22331,MobC family plasmid mobilization relaxosome protein,Function unknown
L1A16_RS05460,NA,gene-L1A16_RS05460,1086796,1088625,0,1,accessory,0,0,0,1.28665,1.23395,1.4409,SAG1250 family conjugative relaxase,Intracellular trafficing and secretion
L1A16_RS05465,NA,gene-L1A16_RS05465,1088729,1088956,0,1,accessory,0,0,0,92.2727,111.998,49.6136,helix-turn-helix transcriptional regulator,Transcription
L1A16_RS05470,NA,gene-L1A16_RS05470,1089223,1089456,0,1,accessory,0,0,0,27.8502,4.6096,7.81285,hypothetical protein,"No annotation - Protein had a hit in the EggNOG database, but the function is not annotated"
L1A16_RS05475,NA,gene-L1A16_RS05475,1089541,1091049,0,1,accessory,0,0,0,107.102,101.899,117.355,site-specific integrase,Replication and repair
L1A19_RS08055,gene-L1A19_RS08055,NA,1603248,1604018,1,0,accessory,34.7816,37.1618,37.4279,0,0,0,sulfite exporter TauE/SafE family protein,Function unknown
L1A19_RS08060,gene-L1A19_RS08060,NA,1604033,1604881,1,0,accessory,31.8833,33.0964,40.5995,0,0,0,formylglycine-generating enzyme family protein,Function unknown
L1A19_RS08065,gene-L1A19_RS08065,NA,1604878,1606353,1,0,accessory,26.8657,24.3408,27.8434,0,0,0,arylsulfatase,Inorganic ion transport and metabolism
L1A19_RS08070,gene-L1A19_RS08070,NA,1606676,1608031,1,0,accessory,30.1191,23.2913,28.8068,0,0,0,PTS sugar transporter subunit IIC,Carbohydrate metabolism and transport
L1A19_RS08075,gene-L1A19_RS08075,NA,1608041,1608358,1,0,accessory,45.8131,50.6142,59.8369,0,0,0,PTS lactose/cellobiose transporter subunit IIA,Carbohydrate metabolism and transport
L1A19_RS08080,gene-L1A19_RS08080,NA,1608375,1608692,1,0,accessory,25.5313,28.9224,40.2182,0,0,0,PTS sugar transporter subunit IIB,Carbohydrate metabolism and transport
L1A19_RS08085,gene-L1A19_RS08085,NA,1608707,1609603,1,0,accessory,11.6511,11.785,13.2074,0,0,0,PEP phosphonomutase,"Post-translational modification, protein turnover, chaperone functions"
L1A19_RS08090,gene-L1A19_RS08090,NA,1609606,1610868,1,0,accessory,20.0745,18.4782,21.6063,0,0,0,PTS sugar transporter subunit IIC,Carbohydrate metabolism and transport
L1A19_RS08095,gene-L1A19_RS08095,NA,1611148,1612326,1,0,accessory,22.7484,24.7356,23.1757,0,0,0,ROK family transcriptional regulator,Transcription