Hello,
I noticed some gene annotations are missing. In the example below, the variant highlighted has no annotation, but when I looked in IGV, there is the WASH7P gene there. And the variants is annotated with other databases like 1000 Genomes AF and it has a dbSNP rsID.
In a subset of 500,000 rows, 253,006 are missing a gene annotation.
I ran the tool with oc v2.17.0 and hg38 v1.47.2
Could my problem be because my hg38 annotations are not up-to-date? Or there is another module that could get this information?
Thank you for your help
Hello,
I noticed some gene annotations are missing. In the example below, the variant highlighted has no annotation, but when I looked in IGV, there is the WASH7P gene there. And the variants is annotated with other databases like 1000 Genomes AF and it has a dbSNP rsID.
In a subset of 500,000 rows, 253,006 are missing a gene annotation.
I ran the tool with oc v2.17.0 and hg38 v1.47.2
Could my problem be because my hg38 annotations are not up-to-date? Or there is another module that could get this information?
Thank you for your help