BioAgentFlow/docker-compose.yml at main · S2026NG/BioAgentFlow · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
version: "3.9"

services:
  bioagentflow:
    build:
      context: .
      dockerfile: Dockerfile
    container_name: bioagentflow
    ports:
      - "8501:8501"
    volumes:
      - bioagentflow-data:/app/data
      - bioagentflow-output:/app/output
      - bioagentflow-cache:/app/cache
    environment:
      - BIOAGENTFLOW_DATA_DIR=/app/data
      - BIOAGENTFLOW_CACHE_DIR=/app/cache
      - BIOAGENTFLOW_LOG_LEVEL=INFO
      # Uncomment and set for external API access:
      # - UNIPROT_API_KEY=
      # - PDB_API_KEY=
      # - CHEMBL_API_KEY=
    restart: unless-stopped
    healthcheck:
      test: ["CMD", "python", "-c", "import bioagentflow; print('ok')"]
      interval: 30s
      timeout: 10s
      retries: 3
      start_period: 10s

volumes:
  bioagentflow-data:
    driver: local
  bioagentflow-output:
    driver: local
  bioagentflow-cache:
    driver: local