Issues

• New issue building VCFs from mafs

  maize-genetics/phg_v2#377 · Filter by author jsarriaa opened on Oct 1, 2026
  2

• [REQUEST]: Add bin size to ps4g header

  maize-genetics/phg_v2#369 · Filter by author pjbradbury opened on Jun 26, 2026
  

• Missing sites from merged vcf after merge-gvcfs command

  maize-genetics/phg_v2#367 · Filter by author aariani opened on Jun 2, 2026

• Crash when building the VCFs from MAF

  maize-genetics/phg_v2#356 · Filter by author jsarriaa opened on Apr 7, 2026
  4

• Lack of a gene in some genotypes of a range

  maize-genetics/phg_v2#340 · Filter by author jsarriaa opened on Dec 3, 2025
  9

  

• [REQUEST]: name argument when mapping with --read-files option

  maize-genetics/phg_v2#326 · Filter by author jaudall1 opened on Jul 21, 2025

• [REQUEST]: create --output-dir if none exists

  enhancement
  maize-genetics/phg_v2#321 · Filter by author jaudall1 opened on Jul 4, 2025
  1

  

• [REQUEST]: Imputation accuracy metrics

  maize-genetics/phg_v2#306 · Filter by author ziggy-zaia opened on Apr 11, 2025
  5

• [BUG]: Issue running hvcf2gvcf on a merged hvcf

  bug
  maize-genetics/phg_v2#304 · Filter by author mtkelleher opened on Apr 3, 2025
  15

• [BUG]: hvcfs have repeated haplotype IDs

  bug
  maize-genetics/phg_v2#293 · Filter by author jesse-hill opened on Mar 12, 2025
  2

• [REQUEST]: hvcf2gvcf for a specific taxa list

  maize-genetics/phg_v2#289 · Filter by author jesse-hill opened on Mar 10, 2025
  1

• [REQUEST]: imputation from VCF

  maize-genetics/phg_v2#235 · Filter by author ClayBirkett opened on Oct 22, 2024
  2

• [REQUEST]: PathtoGFF Plugin

  maize-genetics/phg_v2#159 · Filter by author em255 opened on May 8, 2024
  1