Add image QC and transcript QC subworkflow (ported from nf-xenium-processing dev HEAD) #329
Triggered via pull request
August 27, 2026 15:46
an-altosian
Status
Success
Total duration
1h 17m 12s
Artifacts
4
Annotations
6 errors and 28 warnings
|
docker | latest-everything | 11/12
Test with latest-everything failed
|
|
docker | latest-everything | 11/12
Process completed with exit code 1.
|
|
docker | latest-everything | 5/12
Test with latest-everything failed
|
|
docker | latest-everything | 5/12
Process completed with exit code 1.
|
|
docker | latest-everything | 10/12
Test with latest-everything failed
|
|
docker | latest-everything | 10/12
Process completed with exit code 1.
|
|
nf-test-changes
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | latest-everything | 7/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | 26.04.6 | 7/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | latest-everything | 4/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | latest-everything | 9/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | 26.04.6 | 9/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | 26.04.6 | 4/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | 26.04.6 | 3/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | latest-everything | 3/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | 26.04.6 | 1/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | latest-everything | 1/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | latest-everything | 11/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | latest-everything | 11/12
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
|
|
docker | 26.04.6 | 11/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | latest-everything | 6/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | 26.04.6 | 6/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | latest-everything | 5/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | latest-everything | 5/12
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
|
|
docker | 26.04.6 | 8/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | latest-everything | 8/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | 26.04.6 | 10/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | 26.04.6 | 5/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | latest-everything | 12/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | 26.04.6 | 12/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | 26.04.6 | 2/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | latest-everything | 2/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | latest-everything | 10/12
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, nf-core/setup-nf-test@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
docker | latest-everything | 10/12
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
|
Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
|
pr-comment
|
663 Bytes |
sha256:53822acec20ac7972f55dc83940d1541c9e7113e49de418aa9712edddef2c7fa
|
|
|
pr-comment-fragment-19
|
187 Bytes |
sha256:c44a699dbbe1e459700097232483e3a70d3511cc7865d3ed48edef1b63c5bc4e
|
|
|
pr-comment-fragment-21
|
187 Bytes |
sha256:d401a5d42c7d7781c2b69a1729c4f68fece68965139379131cc5f8759ac22a7c
|
|
|
pr-comment-fragment-9
|
186 Bytes |
sha256:bdb824f723dae26f52ec24054bac6d4d38e4024c2813b230ef5f8b9e81e915ae
|
|