Repositories list

• SpekCheck

  Public
  Calculate the spectral transmission of a dichroic/filter series

  JavaScript

  •

  GNU General Public License v3.0

  •44 forks in MicronOxford/SpekCheck•44 stars in MicronOxford/SpekCheck•1212 issues in MicronOxford/SpekCheck•00 pull requests in MicronOxford/SpekCheck•Updated Jul 14, 2026Jul 14, 2026

• RedPitaya-DSP

  Public
  ActionTable runner for the Red Pitaya.

  C

  •66 forks in MicronOxford/RedPitaya-DSP•22 stars in MicronOxford/RedPitaya-DSP•55 issues in MicronOxford/RedPitaya-DSP•11 pull request in MicronOxford/RedPitaya-DSP•Updated May 23, 2025May 23, 2025

• microscope

  Public
  Python library for control of microscope devices, supporting hardware triggers and distribution of devices over the network for performance and flexibility.

  Python

  •

  GNU General Public License v3.0

  •4343 forks in MicronOxford/microscope•11 star in MicronOxford/microscope•00 issues in MicronOxford/microscope•00 pull requests in MicronOxford/microscope•Updated Jan 12, 2023Jan 12, 2023

• coffee-club

  Public
  Python

  •00 forks in MicronOxford/coffee-club•00 stars in MicronOxford/coffee-club•11 issue in MicronOxford/coffee-club•00 pull requests in MicronOxford/coffee-club•Updated Jul 21, 2021Jul 21, 2021

• configs

  Public
  Micron configs

  Python

  •11 fork in MicronOxford/configs•00 stars in MicronOxford/configs•00 issues in MicronOxford/configs•00 pull requests in MicronOxford/configs•Updated Jun 25, 2021Jun 25, 2021

• scripts

  Public
  Collection of scripts developed at Micron.

  Python

  •66 forks in MicronOxford/scripts•11 star in MicronOxford/scripts•11 issue in MicronOxford/scripts•11 pull request in MicronOxford/scripts•Updated Jun 5, 2021Jun 5, 2021

• microscope-aotools

  Public
  microscope addon for adaptive optics

  Python

  •

  GNU General Public License v3.0

  •1010 forks in MicronOxford/microscope-aotools•77 stars in MicronOxford/microscope-aotools•1010 issues in MicronOxford/microscope-aotools•00 pull requests in MicronOxford/microscope-aotools•Updated May 27, 2021May 27, 2021

• BeamDelta

  Public
  Alignment tool

  Python

  •

  GNU General Public License v3.0

  •77 forks in MicronOxford/BeamDelta•66 stars in MicronOxford/BeamDelta•77 issues in MicronOxford/BeamDelta•00 pull requests in MicronOxford/BeamDelta•Updated May 20, 2021May 20, 2021

• SIMcheck

  Public
  SIMcheck: ImageJ tools for assessing Structured Illumination Microscopy (SIM) data quality and reliability

  Java

  •

  GNU General Public License v3.0

  •55 forks in MicronOxford/SIMcheck•3030 stars in MicronOxford/SIMcheck•66 issues in MicronOxford/SIMcheck•00 pull requests in MicronOxford/SIMcheck•Updated Jan 27, 2021Jan 27, 2021

• SIMcheck_Manual

  Public
  Python

  •22 forks in MicronOxford/SIMcheck_Manual•11 star in MicronOxford/SIMcheck_Manual•00 issues in MicronOxford/SIMcheck_Manual•00 pull requests in MicronOxford/SIMcheck_Manual•Updated Jan 27, 2021Jan 27, 2021

• SIMcheck-update-site

  Public
  ImageJ update site for the SIMcheck plugin.

  00 forks in MicronOxford/SIMcheck-update-site•00 stars in MicronOxford/SIMcheck-update-site•00 issues in MicronOxford/SIMcheck-update-site•00 pull requests in MicronOxford/SIMcheck-update-site•Updated Jan 22, 2021Jan 22, 2021

• microscopi

  Public
  Initial software for the 'microscoPI', Raspberry Pi based microscope platform

  Python

  •22 forks in MicronOxford/microscopi•11 star in MicronOxford/microscopi•00 issues in MicronOxford/microscopi•11 pull request in MicronOxford/microscopi•Updated Jan 18, 2021Jan 18, 2021

• ImageAnalysisPractical

  Public
  Biomedical image analysis Engineering practical

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •22 forks in MicronOxford/ImageAnalysisPractical•00 stars in MicronOxford/ImageAnalysisPractical•00 issues in MicronOxford/ImageAnalysisPractical•00 pull requests in MicronOxford/ImageAnalysisPractical•Updated May 19, 2020May 19, 2020

• cockpit-lasers

  Public archive
  DEPRECATED: rolled into MicronOxford/microscope

  Python

  •22 forks in MicronOxford/cockpit-lasers•00 stars in MicronOxford/cockpit-lasers•00 issues in MicronOxford/cockpit-lasers•00 pull requests in MicronOxford/cockpit-lasers•Updated Jul 22, 2019Jul 22, 2019

• OMXeditor

  Public
  Python

  •22 forks in MicronOxford/OMXeditor•11 star in MicronOxford/OMXeditor•33 issues in MicronOxford/OMXeditor•00 pull requests in MicronOxford/OMXeditor•Updated Dec 17, 2018Dec 17, 2018

• micron-website

  Public
  source for http://www2.bioch.ox.ac.uk/microngroup/micron_home.php

  PHP

  •33 forks in MicronOxford/micron-website•00 stars in MicronOxford/micron-website•00 issues in MicronOxford/micron-website•00 pull requests in MicronOxford/micron-website•Updated Nov 21, 2018Nov 21, 2018

• microscope.tools

  Public
  A collection of tools related to microscopy and microscope control.

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •44 forks in MicronOxford/microscope.tools•22 stars in MicronOxford/microscope.tools•00 issues in MicronOxford/microscope.tools•00 pull requests in MicronOxford/microscope.tools•Updated Aug 8, 2017Aug 8, 2017

• cool

  Public
  Centroid Origin Optimising Localiser

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •22 forks in MicronOxford/cool•11 star in MicronOxford/cool•11 issue in MicronOxford/cool•00 pull requests in MicronOxford/cool•Updated May 18, 2017May 18, 2017

• OLID

  Public
  Python

  •11 fork in MicronOxford/OLID•00 stars in MicronOxford/OLID•00 issues in MicronOxford/OLID•00 pull requests in MicronOxford/OLID•Updated Apr 20, 2017Apr 20, 2017

• specs

  Public
  Technical specifications for equipment, programs, and file formats.

  Perl

  •00 forks in MicronOxford/specs•00 stars in MicronOxford/specs•00 issues in MicronOxford/specs•00 pull requests in MicronOxford/specs•Updated Oct 6, 2016Oct 6, 2016

• bumblebee

  Public
  converted to git from http://bumblebeeman.sourceforge.net/

  PHP

  •22 forks in MicronOxford/bumblebee•00 stars in MicronOxford/bumblebee•1111 issues in MicronOxford/bumblebee•00 pull requests in MicronOxford/bumblebee•Updated Jul 13, 2016Jul 13, 2016

• CUDA_SIMrecon

  Public
  Image reconstruction for structured-illumination microscopy implemented in CUDA

  C++

  •1515 forks in MicronOxford/CUDA_SIMrecon•22 stars in MicronOxford/CUDA_SIMrecon•11 issue in MicronOxford/CUDA_SIMrecon•00 pull requests in MicronOxford/CUDA_SIMrecon•Updated Feb 4, 2016Feb 4, 2016

• teaching

  Public
  Source for some classes given.

  TeX

  •00 forks in MicronOxford/teaching•00 stars in MicronOxford/teaching•00 issues in MicronOxford/teaching•00 pull requests in MicronOxford/teaching•Updated Mar 16, 2015Mar 16, 2015

• omero_scripts_processing

  Public
  python module to abstract image processing in omero scripts

  Python

  •

  GNU Affero General Public License v3.0

  •11 fork in MicronOxford/omero_scripts_processing•11 star in MicronOxford/omero_scripts_processing•00 issues in MicronOxford/omero_scripts_processing•00 pull requests in MicronOxford/omero_scripts_processing•Updated Sep 24, 2014Sep 24, 2014