Repositories list

• DuckVEP

  Public

  RGenomicsETL/DuckVEP’s past year of commit activity
  Ensembl VEP consequence annotation as a resident, relation-first DuckDB extension, with HGVS, haplotypes and an R front end

  C

  •

  GNU General Public License v2.0

  •00 forks in RGenomicsETL/DuckVEP•22 stars in RGenomicsETL/DuckVEP•44 issues in RGenomicsETL/DuckVEP•11 pull request in RGenomicsETL/DuckVEP•Updated Oct 17, 2026Oct 17, 2026

• duckhts

  Public template

  RGenomicsETL/duckhts’s past year of commit activity
  'htslib' based 'Duckdb' Extenstion for High Throughput Sequencing File Formats

  vcfrstatsbam+ 3

  vcfrstatsbamhtslibfastqduckdb-extension

  C

  •

  MIT License

  •2020 forks in RGenomicsETL/duckhts•2020 stars in RGenomicsETL/duckhts•55 issues in RGenomicsETL/duckhts•00 pull requests in RGenomicsETL/duckhts•Updated Oct 17, 2026Oct 17, 2026

• community-extensions

  Public

  RGenomicsETL/community-extensions’s past year of commit activity
  Python

  •287287 forks in RGenomicsETL/community-extensions•00 stars in RGenomicsETL/community-extensions•00 issues in RGenomicsETL/community-extensions•00 pull requests in RGenomicsETL/community-extensions•Updated Oct 17, 2026Oct 17, 2026

• RGlimpse2

  Public

  RGenomicsETL/RGlimpse2’s past year of commit activity
  RGlimpse2: An 'R' Wrapper of 'GLIMPSE2' for low-pass sequencing inference

  ancestryrstatsimputation+ 1

  ancestryrstatsimputationglimpse2

  C++

  •

  MIT License

  •00 forks in RGenomicsETL/RGlimpse2•00 stars in RGenomicsETL/RGlimpse2•00 issues in RGenomicsETL/RGlimpse2•00 pull requests in RGenomicsETL/RGlimpse2•Updated Oct 17, 2026Oct 17, 2026

• VariantStoryBench

  Public

  RGenomicsETL/VariantStoryBench’s past year of commit activity
  R

  •

  GNU General Public License v2.0

  •00 forks in RGenomicsETL/VariantStoryBench•00 stars in RGenomicsETL/VariantStoryBench•00 issues in RGenomicsETL/VariantStoryBench•00 pull requests in RGenomicsETL/VariantStoryBench•Updated Oct 15, 2026Oct 15, 2026

• ducksemantics

  Public

  RGenomicsETL/ducksemantics’s past year of commit activity
  C

  •

  Other

  •00 forks in RGenomicsETL/ducksemantics•33 stars in RGenomicsETL/ducksemantics•11 issue in RGenomicsETL/ducksemantics•00 pull requests in RGenomicsETL/ducksemantics•Updated Oct 12, 2026Oct 12, 2026

• RGenomicsETL.r-universe.dev

  Public

  RGenomicsETL/RGenomicsETL.r-universe.dev’s past year of commit activity
  00 forks in RGenomicsETL/RGenomicsETL.r-universe.dev•00 stars in RGenomicsETL/RGenomicsETL.r-universe.dev•00 issues in RGenomicsETL/RGenomicsETL.r-universe.dev•00 pull requests in RGenomicsETL/RGenomicsETL.r-universe.dev•Updated Oct 8, 2026Oct 8, 2026

• DuckClinVarbitration

  Public
  Stream official ClinVar VCV XML releases into relational DuckDB evidence tables

  bioinformaticsrgenomics+ 3

  bioinformaticsrgenomicsrstatsclinvarduckdb

  C

  •

  GNU General Public License v2.0

  •00 forks in RGenomicsETL/DuckClinVarbitration•00 stars in RGenomicsETL/DuckClinVarbitration•11 issue in RGenomicsETL/DuckClinVarbitration•00 pull requests in RGenomicsETL/DuckClinVarbitration•Updated Oct 6, 2026Oct 6, 2026

• ducksassy

  Public
  Approximate string matching inside DuckDB via sassy rust crate

  simdstring-matchingsassy+ 1

  simdstring-matchingsassyduckdb-extension

  C

  •

  GNU General Public License v2.0

  •00 forks in RGenomicsETL/ducksassy•00 stars in RGenomicsETL/ducksassy•00 issues in RGenomicsETL/ducksassy•00 pull requests in RGenomicsETL/ducksassy•Updated Oct 5, 2026Oct 5, 2026

• Rminibwa

  Public
  Native R bindings and runtime SIMD dispatch for the minibwa genomic read aligner

  bioinformaticsrgenomics+ 6

  bioinformaticsrgenomicssimdalignmentr-packagec-apialtrepminibwa

  C

  •00 forks in RGenomicsETL/Rminibwa•00 stars in RGenomicsETL/Rminibwa•00 issues in RGenomicsETL/Rminibwa•00 pull requests in RGenomicsETL/Rminibwa•Updated Oct 5, 2026Oct 5, 2026

• duckseq

  Public
  Demos of one thesis: standard formats and DuckDB SQL over DuckHTS readers give the same answers as bespoke genomics tools, measured against each tool

  HTML

  •

  GNU General Public License v2.0

  •00 forks in RGenomicsETL/duckseq•11 star in RGenomicsETL/duckseq•00 issues in RGenomicsETL/duckseq•00 pull requests in RGenomicsETL/duckseq•Updated Oct 4, 2026Oct 4, 2026

• RBCFTools

  Public
  Bundled 'FastDup', 'Samtools', 'BCFtools', and 'HTSlib' Utilities

  genomicsrstatsparquet+ 5

  genomicsrstatsparquethtslibbcftoolsduckdbducklakenanoarrow

  C

  •

  GNU General Public License v3.0

  •00 forks in RGenomicsETL/RBCFTools•22 stars in RGenomicsETL/RBCFTools•00 issues in RGenomicsETL/RBCFTools•00 pull requests in RGenomicsETL/RBCFTools•Updated Oct 1, 2026Oct 1, 2026

• duckdb-extensions

  Public
  Signed DuckDB 2.0 extension repository for RGenomicsETL extensions (dev and stable channels)

  Python

  •

  GNU General Public License v2.0

  •00 forks in RGenomicsETL/duckdb-extensions•00 stars in RGenomicsETL/duckdb-extensions•00 issues in RGenomicsETL/duckdb-extensions•00 pull requests in RGenomicsETL/duckdb-extensions•Updated Sep 30, 2026Sep 30, 2026

• nanonext

  Public
  R binding for NNG (Nanomsg Next Gen)

  C

  •

  Other

  •1414 forks in RGenomicsETL/nanonext•00 stars in RGenomicsETL/nanonext•00 issues in RGenomicsETL/nanonext•00 pull requests in RGenomicsETL/nanonext•Updated Sep 26, 2026Sep 26, 2026

• Rho

  Public
  An asynchronous agent runtime for R

  R

  •

  Other

  •00 forks in RGenomicsETL/Rho•11 star in RGenomicsETL/Rho•77 issues in RGenomicsETL/Rho•00 pull requests in RGenomicsETL/Rho•Updated Sep 26, 2026Sep 26, 2026

• .github

  Public
  RGenomicsETL

  GNU General Public License v3.0

  •00 forks in RGenomicsETL/.github•00 stars in RGenomicsETL/.github•00 issues in RGenomicsETL/.github•00 pull requests in RGenomicsETL/.github•Updated Sep 26, 2026Sep 26, 2026

• sassy

  Public
  Fast approximate string searching

  Rust

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  MIT License

  •1818 forks in RGenomicsETL/sassy•00 stars in RGenomicsETL/sassy•00 issues in RGenomicsETL/sassy•00 pull requests in RGenomicsETL/sassy•Updated Sep 23, 2026Sep 23, 2026

• ducknng

  Public
  ducknng: a 'DuckDB' Binding To The 'NNG' Scalability Protocols Library And an 'Arrow IPC'-based 'RPC' Framework

  cnetworknng+ 1

  cnetworknngduckdb-extension

  C

  •00 forks in RGenomicsETL/ducknng•33 stars in RGenomicsETL/ducknng•11 issue in RGenomicsETL/ducknng•00 pull requests in RGenomicsETL/ducknng•Updated Sep 22, 2026Sep 22, 2026

• duckminibwa

  Public
  C

  •00 forks in RGenomicsETL/duckminibwa•00 stars in RGenomicsETL/duckminibwa•00 issues in RGenomicsETL/duckminibwa•00 pull requests in RGenomicsETL/duckminibwa•Updated Sep 21, 2026Sep 21, 2026

• CanardAbsurd

  Public
  Durable R workflows with DuckDB state and Quack remote SQL (Slop)

  rslopquack+ 2

  rslopquackduckdbdurable-execution

  R

  •

  GNU General Public License v2.0

  •00 forks in RGenomicsETL/CanardAbsurd•11 star in RGenomicsETL/CanardAbsurd•00 issues in RGenomicsETL/CanardAbsurd•00 pull requests in RGenomicsETL/CanardAbsurd•Updated Sep 20, 2026Sep 20, 2026

• Rfmalloc

  Public
  Out-of-core arrays for R : memory-mapped ALTREP over pluggable storage codecs and compute backends. Larger-than-RAM genomics and quantized GGUF/GGML LLM inferen…

  rgenomicsmalloc+ 12

  rgenomicsmallocsimdmmapblasr-packagequantizationout-of-corememory-mapped+ 5

  C

  •00 forks in RGenomicsETL/Rfmalloc•44 stars in RGenomicsETL/Rfmalloc•00 issues in RGenomicsETL/Rfmalloc•00 pull requests in RGenomicsETL/Rfmalloc•Updated Sep 9, 2026Sep 9, 2026

• Rzarrs

  Public
  R bindings to the zarrs Rust library for reading Zarr V3 stores

  rustrstatszarr+ 1

  rustrstatszarrzarrs

  Rust

  •00 forks in RGenomicsETL/Rzarrs•66 stars in RGenomicsETL/Rzarrs•00 issues in RGenomicsETL/Rzarrs•00 pull requests in RGenomicsETL/Rzarrs•Updated Sep 7, 2026Sep 7, 2026

• Rducks

  Public
  Register 'R' User-Defined Functions in 'DuckDB'

  crduckdb-extension

  crduckdb-extension

  C

  •00 forks in RGenomicsETL/Rducks•99 stars in RGenomicsETL/Rducks•00 issues in RGenomicsETL/Rducks•00 pull requests in RGenomicsETL/Rducks•Updated Aug 25, 2026Aug 25, 2026

• Rdragmap

  Public
  R wrapper and portable hard fork of DRAGMAP

  bioinformaticsrallignment

  bioinformaticsrallignment

  C++

  •

  Other

  •00 forks in RGenomicsETL/Rdragmap•00 stars in RGenomicsETL/Rdragmap•00 issues in RGenomicsETL/Rdragmap•00 pull requests in RGenomicsETL/Rdragmap•Updated Aug 10, 2026Aug 10, 2026

• Rbebelm

  Public
  'R' Bindings for 'BebeLM' 'CPU' Inference

  rustsimdrstats+ 1

  rustsimdrstatslocal-llm

  Rust

  •

  GNU General Public License v3.0

  •00 forks in RGenomicsETL/Rbebelm•11 star in RGenomicsETL/Rbebelm•11 issue in RGenomicsETL/Rbebelm•00 pull requests in RGenomicsETL/Rbebelm•Updated Aug 5, 2026Aug 5, 2026

• doctest

  Public
  Generate tests from examples using 'roxygen' and 'testthat' or 'tinytest'

  R

  •

  Other

  •44 forks in RGenomicsETL/doctest•00 stars in RGenomicsETL/doctest•00 issues in RGenomicsETL/doctest•00 pull requests in RGenomicsETL/doctest•Updated Aug 4, 2026Aug 4, 2026

• STITCH

  Public
  STITCH - Sequencing To Imputation Through Constructing Haplotypes

  C

  •

  GNU General Public License v3.0

  •2424 forks in RGenomicsETL/STITCH•00 stars in RGenomicsETL/STITCH•11 issue in RGenomicsETL/STITCH•00 pull requests in RGenomicsETL/STITCH•Updated Aug 4, 2026Aug 4, 2026

• Rtskit

  Public
  Native R bindings to the tskit C API for succinct tree sequences

  C

  •00 forks in RGenomicsETL/Rtskit•00 stars in RGenomicsETL/Rtskit•00 issues in RGenomicsETL/Rtskit•00 pull requests in RGenomicsETL/Rtskit•Updated Jul 27, 2026Jul 27, 2026

• XCNV

  Public
  XCNV As R Package

  rcnvrare-disease+ 1

  rcnvrare-diseasexcnv

  R

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  Other

  •11 fork in RGenomicsETL/XCNV•00 stars in RGenomicsETL/XCNV•00 issues in RGenomicsETL/XCNV•00 pull requests in RGenomicsETL/XCNV•Updated Jul 27, 2026Jul 27, 2026

• Ropendal

  Public
  Abstract Filesystem Access for 'R' via 'Apache OpenDAL'

  rustfilesystemrstats+ 1

  rustfilesystemrstatsopendal

  Rust

  •11 fork in RGenomicsETL/Ropendal•55 stars in RGenomicsETL/Ropendal•00 issues in RGenomicsETL/Ropendal•00 pull requests in RGenomicsETL/Ropendal•Updated Jul 23, 2026Jul 23, 2026