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    16 repositories

    • phy_plugins

      Public
      Plugins for the manual spike sorting program phy
      Python
      •2•0•0•0•Updated Sep 30, 2026Sep 30, 2026

    • STNMF_with_AFHALS

      Public
      A fast and versatile implementation of spike-triggered non-negative matrix factorization (STNMF) based on accelerated/fast HALS algorithms
      neuroscienceretinanmf
      neuroscienceretinanmfhalsreceptive-fieldprimatesubunitsstnmfnnsvd-lrc
      Python
      •
      MIT License
      •0•2•0•0•Updated Jul 25, 2026Jul 25, 2026

    • GGNB-python-course

      Public
      GGNB Short Method Course "Spike-train analysis with Python" in the Gollisch Lab
      Jupyter Notebook
      •3•1•0•0•Updated May 4, 2026May 4, 2026

    • SpatiotemporalSCModel

      Public
      Code for fitting and evaluating spatiotemporal spatial contrast models for retinal ganglion cell responses to artificial and natural movies
      Python
      •
      MIT License
      •0•1•0•0•Updated Jan 30, 2026Jan 30, 2026

    • Super-Resolved_Tomographic_Reconstruction

      Public
      Simulations of subunit models of retinal ganglion cells and reconstruction of their subunits with super-resolved tomographic reconstruction (STR).
      Python
      •0•0•0•0•Updated Aug 4, 2024Aug 4, 2024

    • ConvertDatMEA

      Public
      Extract channels from multielectrode array (MEA) recordings. Can convert from MSRD or MCD files to a binary format.
      C#
      •
      MIT License
      •0•1•0•0•Updated Apr 21, 2024Apr 21, 2024

    • RecreateWhiteNoiseStimuliWithPython

      Public
      Code for regenerating the random-number-based contrast values used for white-noise stimulation in the Gollisch Lab. Used for both temporal and spatiotemporal st…
      pythonretinastimulation
      pythonretinastimulationwhite-noise
      Python
      •
      MIT License
      •0•1•0•0•Updated Jan 20, 2024Jan 20, 2024

    • ExtractEyeFixationsForNaturalStimuli

      Public
      Extract and format fixations from eye tracking data
      Python
      •
      MIT License
      •0•2•0•0•Updated Aug 17, 2023Aug 17, 2023

    • Subunits_with_Superresolution_Tomography

      Public
      Simulations of subunit model of a retinal ganglion cell in response to Mexican-hat-like bar stimuli and reconstruction of subunit layout via inverse Radon trans…
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 5, 2023Jul 5, 2023

    • phy-MEA

      Public
      Phy (older version) stable for MEA recordings at the cost of lacking the latest features
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •188•1•0•0•Updated Jul 18, 2022Jul 18, 2022

    • pymer

      Public
      Collection of Python scripts for analyzing extracellular multielectrode array recordings from the retina in the Gollisch lab, Göttingen.
      Python
      •1•0•0•0•Updated Mar 15, 2021Mar 15, 2021

    • ChromaticIntegrationAnalysis

      Public
      Code for analyzing chromatic integration properties of recorded retinal ganglion cells in the data accompanying the paper by Khani and Gollisch, 2021.
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Feb 23, 2021Feb 23, 2021

    • RecreateWhiteNoiseStimuliWithMatlab

      Public
      Matlab code to recreate random number lists for white noise stimuli in the lab
      C++
      •
      MIT License
      •0•0•0•0•Updated Feb 10, 2021Feb 10, 2021

    • AnalysisForDSPopulationCodes

      Public
      Analysis methods for populations of direction-selective ganglion cells. Accompanying a manuscript by Kühn and Gollisch.
      MATLAB
      •
      MIT License
      •0•1•0•0•Updated Nov 16, 2018Nov 16, 2018

    • STNMFanalysis

      Public
      Code for neuronal subunit analysis with spike-triggered non-negative matrix factorization
      MATLAB
      •
      GNU General Public License v3.0
      •1•5•0•0•Updated Mar 8, 2017Mar 8, 2017

    • IRScellSimulation

      Public
      Simulation of a specific type of retinal ganglion cell under saccade-like image transitions. Accompanying a manuscript by Krishnamoorthy, Weick, and Gollisch.
      MATLAB
      •
      MIT License
      •1•0•0•0•Updated Feb 14, 2017Feb 14, 2017
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