Repositories list

• irt-neutrophil-sarilumab

  Public
  Sarilumab model created with IRT

  Julia

  •

  MIT License

  •00 forks in insysbio/irt-neutrophil-sarilumab•00 stars in insysbio/irt-neutrophil-sarilumab•00 issues in insysbio/irt-neutrophil-sarilumab•00 pull requests in insysbio/irt-neutrophil-sarilumab•Updated Oct 20, 2026Oct 20, 2026

• CICOBase.jl

  Public
  CICOBase.jl is a Julia package for practical identifiability analysis and confidence intervals evaluation

  Julia

  •

  MIT License

  •00 forks in insysbio/CICOBase.jl•33 stars in insysbio/CICOBase.jl•33 issues in insysbio/CICOBase.jl•00 pull requests in insysbio/CICOBase.jl•Updated Oct 15, 2026Oct 15, 2026

• sbio-to-json

  Public
  Code for transformation of Matlab/Simbiology model to JSON format

  jsonsystems-biologyformat-converter+ 1

  jsonsystems-biologyformat-convertersystems-pharmacology

  MATLAB

  •

  Apache License 2.0

  •00 forks in insysbio/sbio-to-json•11 star in insysbio/sbio-to-json•00 issues in insysbio/sbio-to-json•00 pull requests in insysbio/sbio-to-json•Updated Sep 28, 2026Sep 28, 2026

• SbmlViewer

  Public
  The collection of transformations from SBML files into human readable formats

  visualizationsystems-biologytransformation+ 2

  visualizationsystems-biologytransformationsbmlhuman-readable-formats

  XSLT

  •

  Apache License 2.0

  •11 fork in insysbio/SbmlViewer•66 stars in insysbio/SbmlViewer•11 issue in insysbio/SbmlViewer•55 pull requests in insysbio/SbmlViewer•Updated Sep 22, 2026Sep 22, 2026

• LikelihoodProfiler.jl

  Public
  LikelihoodProfiler is a Julia package for practical identifiability analysis and confidence intervals estimation.

  juliasystems-biologyconfidence-intervals+ 3

  juliasystems-biologyconfidence-intervalslikelihoodidentifiabilityidentifiability-analysis

  Jupyter Notebook

  •

  MIT License

  •55 forks in insysbio/LikelihoodProfiler.jl•3838 stars in insysbio/LikelihoodProfiler.jl•1212 issues in insysbio/LikelihoodProfiler.jl•55 pull requests in insysbio/LikelihoodProfiler.jl•Updated Aug 29, 2026Aug 29, 2026

• CICOBase.py

  Public
  Package for practical identifiability/predictability analysis in Python

  python3confidence-intervalslikelihood+ 3

  python3confidence-intervalslikelihoodidentifiabilityconfidence-estimationidentifiability-analysis

  Python

  •

  MIT License

  •11 fork in insysbio/CICOBase.py•44 stars in insysbio/CICOBase.py•00 issues in insysbio/CICOBase.py•1313 pull requests in insysbio/CICOBase.py•Updated Jul 22, 2026Jul 22, 2026

• LikelihoodProfilerLab.jl

  Public
  Benchmarks and experiments with LikelihoodProfiler.jl

  Julia

  •

  MIT License

  •00 forks in insysbio/LikelihoodProfilerLab.jl•00 stars in insysbio/LikelihoodProfilerLab.jl•00 issues in insysbio/LikelihoodProfilerLab.jl•33 pull requests in insysbio/LikelihoodProfilerLab.jl•Updated Jun 20, 2026Jun 20, 2026

• nlopt

  Public
  library for nonlinear optimization, wrapping many algorithms for global and local, constrained or unconstrained, optimization

  C

  •

  Other

  •689689 forks in insysbio/nlopt•00 stars in insysbio/nlopt•00 issues in insysbio/nlopt•00 pull requests in insysbio/nlopt•Updated Jun 6, 2026Jun 6, 2026

• mathjs-mathml

  Public
  It extends mathjs library by function translating the mathjs' expressions to MathML string

  JavaScript

  •

  Apache License 2.0

  •00 forks in insysbio/mathjs-mathml•11 star in insysbio/mathjs-mathml•00 issues in insysbio/mathjs-mathml•22 pull requests in insysbio/mathjs-mathml•Updated Jun 1, 2026Jun 1, 2026

• insulin-signaling-t2d

  Public
  Notebooks usage case: Insulin Signaling in Type 2 Diabetes

  jupyter-notebookrmarkdownmrgsolve+ 3

  jupyter-notebookrmarkdownmrgsolvehetapluto-notebooksqsp-modeling

  HTML

  •

  MIT License

  •00 forks in insysbio/insulin-signaling-t2d•00 stars in insysbio/insulin-signaling-t2d•00 issues in insysbio/insulin-signaling-t2d•00 pull requests in insysbio/insulin-signaling-t2d•Updated Mar 22, 2026Mar 22, 2026

• faah-inhibitor

  Public
  [reproduced] QSP modeling platform describing Fatty Acid Amide Hydrolase inhibition in human

  qsppharmacometricsmodeling-dynamic-systems+ 1

  qsppharmacometricsmodeling-dynamic-systemsheta

  R

  •

  MIT License

  •00 forks in insysbio/faah-inhibitor•00 stars in insysbio/faah-inhibitor•00 issues in insysbio/faah-inhibitor•00 pull requests in insysbio/faah-inhibitor•Updated Mar 19, 2026Mar 19, 2026

• fivedb-api-examples

  Public
  fIVE DB API examples

  R

  •

  MIT License

  •00 forks in insysbio/fivedb-api-examples•00 stars in insysbio/fivedb-api-examples•00 issues in insysbio/fivedb-api-examples•00 pull requests in insysbio/fivedb-api-examples•Updated Oct 7, 2025Oct 7, 2025

• cytocon-api-examples

  Public
  Cytocon DB API examples

  R

  •

  MIT License

  •00 forks in insysbio/cytocon-api-examples•00 stars in insysbio/cytocon-api-examples•00 issues in insysbio/cytocon-api-examples•00 pull requests in insysbio/cytocon-api-examples•Updated Sep 9, 2025Sep 9, 2025

• likelihoodprofiler-cases

  Public
  Storing test and experimental cases for LikelihoodProfiler.jl

  Jupyter Notebook

  •

  MIT License

  •33 forks in insysbio/likelihoodprofiler-cases•33 stars in insysbio/likelihoodprofiler-cases•00 issues in insysbio/likelihoodprofiler-cases•00 pull requests in insysbio/likelihoodprofiler-cases•Updated Jul 3, 2025Jul 3, 2025

• heta-case-mini

  Public
  Demo example of QSP platfrom developed with Heta and qs3p-js

  ci-cdqspheta

  ci-cdqspheta

  R

  •

  MIT License

  •00 forks in insysbio/heta-case-mini•00 stars in insysbio/heta-case-mini•00 issues in insysbio/heta-case-mini•00 pull requests in insysbio/heta-case-mini•Updated Oct 2, 2024Oct 2, 2024

• alco

  Public
  A simple model of alcohol PK build on published data

  pharmacometricspharmacokineticsalcohol+ 3

  pharmacometricspharmacokineticsalcoholidentifiabilityhetaqsp-modeling

  Julia

  •

  MIT License

  •11 fork in insysbio/alco•00 stars in insysbio/alco•00 issues in insysbio/alco•00 pull requests in insysbio/alco•Updated Sep 26, 2024Sep 26, 2024

• drug-loaded-nanoparticles

  Public
  PBPK Modeling For Therapeutic Nanoparticles Loaded With Drug

  computational-biologynanoparticlespbpk+ 2

  computational-biologynanoparticlespbpkhetaqsp-modeling

  Julia

  •

  MIT License

  •00 forks in insysbio/drug-loaded-nanoparticles•11 star in insysbio/drug-loaded-nanoparticles•00 issues in insysbio/drug-loaded-nanoparticles•00 pull requests in insysbio/drug-loaded-nanoparticles•Updated Sep 3, 2024Sep 3, 2024

• a50

  Public
  R

  •00 forks in insysbio/a50•00 stars in insysbio/a50•00 issues in insysbio/a50•00 pull requests in insysbio/a50•Updated Jan 26, 2024Jan 26, 2024

• ant-mito-model

  Public
  Adenine Nucleotide Translocase model

  R

  •

  MIT License

  •11 fork in insysbio/ant-mito-model•00 stars in insysbio/ant-mito-model•00 issues in insysbio/ant-mito-model•00 pull requests in insysbio/ant-mito-model•Updated Dec 29, 2023Dec 29, 2023

• covid19-qsp-model

  Public
  Open Source QSP model describing SARS-CoV-2 virus and host cell life cycles, immune response and therapeutic treatments

  virussystems-pharmacologyqsp+ 3

  virussystems-pharmacologyqspmathematical-modellinghetacovid-19

  MATLAB

  •

  MIT License

  •22 forks in insysbio/covid19-qsp-model•44 stars in insysbio/covid19-qsp-model•00 issues in insysbio/covid19-qsp-model•00 pull requests in insysbio/covid19-qsp-model•Updated Dec 27, 2023Dec 27, 2023

• 5db

  Public
  Documentation for fIVE DB

  HTML

  •00 forks in insysbio/5db•00 stars in insysbio/5db•00 issues in insysbio/5db•00 pull requests in insysbio/5db•Updated Oct 23, 2023Oct 23, 2023

• slv-utils

  Public archive
  Utilities for working with SLV and DAT files.

  systems-biologysystems-pharmacologydbsolve

  systems-biologysystems-pharmacologydbsolve

  JavaScript

  •

  Apache License 2.0

  •00 forks in insysbio/slv-utils•00 stars in insysbio/slv-utils•22 issues in insysbio/slv-utils•11 pull request in insysbio/slv-utils•Updated Apr 20, 2023Apr 20, 2023

• units-parser

  Public archive
  Parsing and transformation of units of measurements

  systems-biologysystems-pharmacology

  systems-biologysystems-pharmacology

  JavaScript

  •

  MIT License

  •00 forks in insysbio/units-parser•11 star in insysbio/units-parser•00 issues in insysbio/units-parser•66 pull requests in insysbio/units-parser•Updated Dec 30, 2022Dec 30, 2022

• mathjs-translate

  Public
  Utilites for manipulation of mathjs expressions.

  expressionsmathjs

  expressionsmathjs

  JavaScript

  •

  Apache License 2.0

  •00 forks in insysbio/mathjs-translate•11 star in insysbio/mathjs-translate•00 issues in insysbio/mathjs-translate•66 pull requests in insysbio/mathjs-translate•Updated Dec 30, 2022Dec 30, 2022

• dbs-package

  Public archive
  Accessory R functions to support DBSolveOptimum

  systems-biologysystems-pharmacologydbsolve

  systems-biologysystems-pharmacologydbsolve

  R

  •

  MIT License

  •00 forks in insysbio/dbs-package•00 stars in insysbio/dbs-package•00 issues in insysbio/dbs-package•00 pull requests in insysbio/dbs-package•Updated Aug 3, 2022Aug 3, 2022

• vp-erythropoiesis

  Public
  C++

  •00 forks in insysbio/vp-erythropoiesis•00 stars in insysbio/vp-erythropoiesis•00 issues in insysbio/vp-erythropoiesis•00 pull requests in insysbio/vp-erythropoiesis•Updated May 29, 2022May 29, 2022

• mathsjs-cmathml

  Public archive
  Translation from mathjs object to content MathML

  translationmathjscontent-mathml

  translationmathjscontent-mathml

  JavaScript

  •

  Apache License 2.0

  •00 forks in insysbio/mathsjs-cmathml•22 stars in insysbio/mathsjs-cmathml•00 issues in insysbio/mathsjs-cmathml•66 pull requests in insysbio/mathsjs-cmathml•Updated Jan 1, 2021Jan 1, 2021

• topo-sort

  Public
  Simple and fast implementation of topological sorting. No dependencies. A circular graph will throw an error with circular nodes info.

  JavaScript

  •

  MIT License

  •11 fork in insysbio/topo-sort•00 stars in insysbio/topo-sort•00 issues in insysbio/topo-sort•00 pull requests in insysbio/topo-sort•Updated May 27, 2019May 27, 2019

• pretty-xml-textconv

  Public archive
  Transforming xml to pretty form in command prompt for git diff.

  xmlgit-diff

  xmlgit-diff

  JavaScript

  •

  Apache License 2.0

  •00 forks in insysbio/pretty-xml-textconv•11 star in insysbio/pretty-xml-textconv•00 issues in insysbio/pretty-xml-textconv•00 pull requests in insysbio/pretty-xml-textconv•Updated Jun 11, 2018Jun 11, 2018

• confest

  Public archive
  systems-biologyconfidence-intervalsidentifiability

  systems-biologyconfidence-intervalsidentifiability

  R

  •11 fork in insysbio/confest•00 stars in insysbio/confest•00 issues in insysbio/confest•00 pull requests in insysbio/confest•Updated Jan 24, 2017Jan 24, 2017