Repositories list

• static-resources

  Public
  Resources that are unlikely to change often, such as configs, test, or infrastructure data

  MIT License

  •00 forks in lehtiolab/static-resources•00 stars in lehtiolab/static-resources•00 issues in lehtiolab/static-resources•00 pull requests in lehtiolab/static-resources•Updated Oct 16, 2026Oct 16, 2026

• kantele

  Public
  Lab proteomics raw and search data management

  Python

  •22 forks in lehtiolab/kantele•22 stars in lehtiolab/kantele•3535 issues in lehtiolab/kantele•11 pull request in lehtiolab/kantele•Updated Oct 15, 2026Oct 15, 2026

• lehtiodocs

  Public
  00 forks in lehtiolab/lehtiodocs•00 stars in lehtiolab/lehtiodocs•22 issues in lehtiolab/lehtiodocs•00 pull requests in lehtiolab/lehtiodocs•Updated Sep 23, 2026Sep 23, 2026

• nf-diann

  Public
  DIA-NN Nextflow workflow

  Nextflow

  •

  MIT License

  •00 forks in lehtiolab/nf-diann•00 stars in lehtiolab/nf-diann•00 issues in lehtiolab/nf-diann•00 pull requests in lehtiolab/nf-diann•Updated Sep 17, 2026Sep 17, 2026

• nf-helaqc_refine

  Public
  Lehtiö lab analysis workflows

  Nextflow

  •

  MIT License

  •44 forks in lehtiolab/nf-helaqc_refine•66 stars in lehtiolab/nf-helaqc_refine•00 issues in lehtiolab/nf-helaqc_refine•00 pull requests in lehtiolab/nf-helaqc_refine•Updated Apr 23, 2026Apr 23, 2026

• ddamsproteomics

  Public
  A Nextflow MS DDA proteomics pipeline

  Nextflow

  •

  MIT License

  •66 forks in lehtiolab/ddamsproteomics•88 stars in lehtiolab/ddamsproteomics•44 issues in lehtiolab/ddamsproteomics•11 pull request in lehtiolab/ddamsproteomics•Updated Apr 17, 2026Apr 17, 2026

• nf-msconvert

  Public
  Leverages proteowizard's msconvert in a nextflow workflow

  Nextflow

  •

  MIT License

  •11 fork in lehtiolab/nf-msconvert•11 star in lehtiolab/nf-msconvert•00 issues in lehtiolab/nf-msconvert•00 pull requests in lehtiolab/nf-msconvert•Updated Apr 16, 2026Apr 16, 2026

• nf-labelcheck

  Public
  Proteomics nextflow labelcheck pipeline with report

  Nextflow

  •

  MIT License

  •11 fork in lehtiolab/nf-labelcheck•11 star in lehtiolab/nf-labelcheck•11 issue in lehtiolab/nf-labelcheck•00 pull requests in lehtiolab/nf-labelcheck•Updated Apr 15, 2026Apr 15, 2026

• msstitch

  Public
  MS proteomics post-processing utilities

  Python

  •

  MIT License

  •33 forks in lehtiolab/msstitch•55 stars in lehtiolab/msstitch•00 issues in lehtiolab/msstitch•00 pull requests in lehtiolab/msstitch•Updated Apr 2, 2026Apr 2, 2026

• lehtiolab.github.io

  Public
  Code & development space for producing new lehtiolab website

  JavaScript

  •00 forks in lehtiolab/lehtiolab.github.io•00 stars in lehtiolab/lehtiolab.github.io•44 issues in lehtiolab/lehtiolab.github.io•00 pull requests in lehtiolab/lehtiolab.github.io•Updated Feb 26, 2026Feb 26, 2026

• workshop_tnbc_scilifelab_pkg

  Public
  Container push for workshop while docker hub is down

  00 forks in lehtiolab/workshop_tnbc_scilifelab_pkg•00 stars in lehtiolab/workshop_tnbc_scilifelab_pkg•00 issues in lehtiolab/workshop_tnbc_scilifelab_pkg•00 pull requests in lehtiolab/workshop_tnbc_scilifelab_pkg•Updated Oct 20, 2025Oct 20, 2025

• MTBP_LC

  Public
  R

  •

  MIT License

  •22 forks in lehtiolab/MTBP_LC•00 stars in lehtiolab/MTBP_LC•00 issues in lehtiolab/MTBP_LC•00 pull requests in lehtiolab/MTBP_LC•Updated Oct 25, 2024Oct 25, 2024

• proteogenomics-analysis-workflow

  Public
  IPAW: a Nextflow workflow for proteogenomics

  Python

  •1010 forks in lehtiolab/proteogenomics-analysis-workflow•2929 stars in lehtiolab/proteogenomics-analysis-workflow•77 issues in lehtiolab/proteogenomics-analysis-workflow•11 pull request in lehtiolab/proteogenomics-analysis-workflow•Updated Aug 8, 2024Aug 8, 2024

• meltmatch

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •00 forks in lehtiolab/meltmatch•00 stars in lehtiolab/meltmatch•00 issues in lehtiolab/meltmatch•00 pull requests in lehtiolab/meltmatch•Updated Mar 20, 2024Mar 20, 2024

• instruments

  Public
  00 forks in lehtiolab/instruments•00 stars in lehtiolab/instruments•1212 issues in lehtiolab/instruments•00 pull requests in lehtiolab/instruments•Updated Feb 9, 2024Feb 9, 2024

• old_website

  Public
  Lehtiolab website

  HTML

  •

  MIT License

  •33 forks in lehtiolab/old_website•11 star in lehtiolab/old_website•00 issues in lehtiolab/old_website•00 pull requests in lehtiolab/old_website•Updated Jul 8, 2023Jul 8, 2023

• verkstad_server

  Public
  Server module for the alternative mass spec maintenance app. Runs in a docker container. Förstås.

  nodejsdockersqlite+ 3

  nodejsdockersqliteproteomicsspectrometermasspec

  Vue

  •00 forks in lehtiolab/verkstad_server•11 star in lehtiolab/verkstad_server•11 issue in lehtiolab/verkstad_server•1818 pull requests in lehtiolab/verkstad_server•Updated Feb 24, 2023Feb 24, 2023

• verkstad_client

  Public
  The alternative ToDo app, optimized for proteomics mass spectrometer maintenance.

  vueproteomicstodoapp+ 1

  vueproteomicstodoappspectrometer

  Vue

  •

  MIT License

  •00 forks in lehtiolab/verkstad_client•77 stars in lehtiolab/verkstad_client•11 issue in lehtiolab/verkstad_client•2525 pull requests in lehtiolab/verkstad_client•Updated Jan 3, 2023Jan 3, 2023

• Code-Availability

  Public
  Code availability for Lehtiö lab papers

  R

  •

  MIT License

  •88 forks in lehtiolab/Code-Availability•33 stars in lehtiolab/Code-Availability•11 issue in lehtiolab/Code-Availability•00 pull requests in lehtiolab/Code-Availability•Updated Jul 1, 2021Jul 1, 2021

• nf-deqms

  Public
  Nextflow

  •

  MIT License

  •00 forks in lehtiolab/nf-deqms•00 stars in lehtiolab/nf-deqms•00 issues in lehtiolab/nf-deqms•00 pull requests in lehtiolab/nf-deqms•Updated Nov 18, 2020Nov 18, 2020

• tools-galaxy

  Public archive
  Lehtiö proteomics lab misc tools

  R

  •

  MIT License

  •00 forks in lehtiolab/tools-galaxy•00 stars in lehtiolab/tools-galaxy•00 issues in lehtiolab/tools-galaxy•00 pull requests in lehtiolab/tools-galaxy•Updated Oct 18, 2017Oct 18, 2017