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@seaflow-uw SeaFlow@UW

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    22 repositories

    • seaflow-multifilter

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • seaflow-web

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Oct 5, 2026Oct 5, 2026

    • seaflowinspect

      Public
      SeaFlow data Shiny app
      R
      •0•0•3•0•Updated Sep 1, 2026Sep 1, 2026

    • seaflowpy

      Public
      Python package with library and CLI tool for analyzing SeaFlow data
      pythonreproducible-researchoceanography
      pythonreproducible-researchoceanographyflow-cytometryseaflow
      Python
      •
      GNU General Public License v3.0
      •3•6•1•0•Updated Aug 31, 2026Aug 31, 2026

    • seaflow-gating

      Public
      1•0•0•0•Updated Aug 31, 2026Aug 31, 2026

    • seaflow-calibration

      Public
      0•0•0•0•Updated Aug 25, 2026Aug 25, 2026

    • seaflow-sfl

      Public
      SFL files contain metadata for each SeaFlow files recorded during the cruise. These metadata are provided by the ship's data broadcast system and are being copi…
      reproducible-researchcruiseseaflow
      reproducible-researchcruiseseaflowship-dataseaflow-instrument
      HTML
      •
      MIT License
      •2•2•0•1•Updated Aug 24, 2026Aug 24, 2026

    • seaflow-curation

      Public
      Contains the function and parameters to flag outliers in SeaFlow data.
      R
      •
      MIT License
      •1•0•0•0•Updated Jul 9, 2026Jul 9, 2026

    • realtime-dbs

      Public
      SeaFlow realtime analysis parameter databases
      MIT License
      •1•0•0•0•Updated Mar 26, 2026Mar 26, 2026

    • cruisetrack-planner

      Public
      a user-friendly interface for planning cruise tracks
      R
      •1•0•0•0•Updated Feb 1, 2026Feb 1, 2026

    • popcycle

      Public
      Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow
      workflowreproducible-researchoceanography
      workflowreproducible-researchoceanographyflow-cytometryseaflowphytoplankton
      R
      •
      MIT License
      •9•9•8•0•Updated Jan 3, 2026Jan 3, 2026

    • seaflog

      Public
      Command-line tool and Go library for parsing SeaFlow instrument v1 log files
      Go
      •
      MIT License
      •0•0•0•0•Updated Dec 1, 2025Dec 1, 2025

    • flowkernel-project

      Public
      R
      •4•0•0•0•Updated Oct 23, 2025Oct 23, 2025

    • fsc-poc-calibration

      Public
      Conversion from light scattering measured by SeaFlow to carbon per cell
      reproducible-researchflow-cytometryseaflow
      reproducible-researchflow-cytometryseaflowcarbon-quotaslight-scatter-measurements
      R
      •
      MIT License
      •0•1•0•0•Updated Nov 21, 2024Nov 21, 2024

    • mpm-workflow

      Public
      SeaFlow matrix population model workflow
      Python
      •
      MIT License
      •0•2•0•0•Updated Jun 14, 2024Jun 14, 2024

    • seaflow-filter

      Public
      reproducible-researchseaflow
      reproducible-researchseaflow
      R
      •
      MIT License
      •1•0•0•0•Updated Jan 26, 2024Jan 26, 2024

    • seaflow-virtualcore

      Public
      Calibration of SeaFlow's Virtual Core
      reproducible-researchflow-cytometryseaflow
      reproducible-researchflow-cytometryseaflow
      R
      •
      MIT License
      •0•1•0•0•Updated Jan 8, 2024Jan 8, 2024

    • SeaFlow_cruise_report

      Public
      knitR and supporting documents to build an R and LaTeX cruise report for SeaFlow data.
      TeX
      •1•1•0•0•Updated Oct 17, 2023Oct 17, 2023

    • flowmix

      Public
      Statistical analysis of ocean flow cytometry data.
      HTML
      •3•0•0•0•Updated Aug 30, 2022Aug 30, 2022

    • flowRate

      Public
      A Bayesian approach to size-structured matrix population model to estimate daily rates of phytoplankton cell division, growth and respiration
      Jupyter Notebook
      •
      MIT License
      •2•0•0•0•Updated Nov 19, 2021Nov 19, 2021

    • cytosegmenter

      Public
      Code accompanying the paper "A Kernel-Based Change Detection Method to Map Shifts in Phytoplankton Communities Measured by Flow Cytometry"
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 1, 2021Sep 1, 2021

    • fsc-size-calibration

      Public
      Conversion from light scattering measured by SeaFlow to cell diameter
      reproducible-researchflow-cytometryseaflow
      reproducible-researchflow-cytometryseaflowcell-diameterscattering-measurements
      R
      •
      MIT License
      •0•3•0•0•Updated Aug 5, 2020Aug 5, 2020
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