Issues

• Meta-analysis standard errors causing convergence problems for LDpred2?

  privefl/bigsnpr#574 · Filter by author kkellysci opened on Jul 20, 2026
  19

• Handle chromosomes already named chr00 (instead of 00) in snp_modifyBuild()

  enhancement
  privefl/bigsnpr#572 · Filter by author privefl opened on Jun 2, 2026

• download_1000G cannot work

  privefl/bigsnpr#570 · Filter by author jason-168 opened on Jan 9, 2026
  4

• Some issues encountered during the use of snp_ldpred2_auto

  privefl/bigsnpr#569 · Filter by author JhGoodLuck opened on Dec 24, 2025
  2

• How to clear disk space when using snp_readBed?

  privefl/bigsnpr#557 · Filter by author latlio opened on Sep 9, 2025
  1

• LDpred2-auto: automatic determination of use_MLE and shrink_corr

  privefl/bigsnpr#554 · Filter by author sritchie73 opened on Jul 24, 2025
  14

• For lassosum2, try sequential solving of decreasing lambda with warm starts

  enhancement
  privefl/bigsnpr#546 · Filter by author privefl opened on Jun 13, 2025

• genetic correlation

  privefl/bigsnpr#539 · Filter by author elisedlzt opened on Apr 2, 2025
  2

• Should error when using a correlation matrix with NA / NaNs values

  enhancementgood for first PR
  privefl/bigsnpr#498 · Filter by author privefl opened on May 22, 2024

• Handle insertions/deletions coded as I/D in snp_match()

  enhancement
  privefl/bigsnpr#494 · Filter by author privefl opened on Apr 18, 2024
  2

• See if could make snp_colstats() faster

  privefl/bigsnpr#470 · Filter by author privefl opened on Dec 20, 2023

• Using bigsnpr C++ headers in my package

  good for first PR
  privefl/bigsnpr#460 · Filter by author kristjanmoore opened on Nov 1, 2023
  5

• Simulating multiple genetically correlated phenotypes

  feature request
  privefl/bigsnpr#419 · Filter by author fmorgante opened on Apr 10, 2023
  7

• Enable parallelism in big_counts()

  enhancementgood for first PR
  privefl/bigsnpr#403 · Filter by author privefl opened on Jan 13, 2023

• Implement bed_(c)prodMat()

  good for first PR
  privefl/bigsnpr#391 · Filter by author privefl opened on Nov 25, 2022
  1

• See if can make snp_grid_clumping() faster

  enhancement
  privefl/bigsnpr#382 · Filter by author privefl opened on Oct 24, 2022
  1

• Implement product that handles missing values

  feature request
  privefl/bigsnpr#298 · Filter by author privefl opened on Jan 19, 2022
  1

• Warn when there are too many missing values to impute

  feature requestgood for first PR
  privefl/bigsnpr#296 · Filter by author privefl opened on Jan 17, 2022

• Verify whether 'omp critical' is not slowing down some code

  privefl/bigsnpr#277 · Filter by author privefl opened on Nov 18, 2021

• Add support for plink2 binary format dosage data (pgen)

  feature requesthelp wanted
  privefl/bigsnpr#253 · Filter by author sritchie73 opened on Aug 9, 2021
  3

• What to do about lambda_GC?

  help wantedquestion
  privefl/bigsnpr#40 · Filter by author privefl opened on Jun 17, 2019
  5

• Support for visualisation of LD

  feature request
  privefl/bigsnpr#4 · Filter by author privefl opened on Oct 16, 2017
  3