Increasing pyMBE interoperability (part I) #518
Workflow file for this run
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| name: testsuite | |
| on: | |
| push: | |
| pull_request: | |
| permissions: | |
| contents: read # to fetch code (actions/checkout) | |
| jobs: | |
| ubuntu: | |
| runs-on: ubuntu-26.04 | |
| env: | |
| FI_PROVIDER: "^psm3,psm3;ofi_rxd" | |
| OMPI_MCA_mtl_ofi_provider_exclude: psm3 | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| strategy: | |
| matrix: | |
| espresso: | |
| - version: "4.2.2" | |
| eessi_modules: ESPResSo/4.2.2-foss-2023b | |
| eessi_stack_version: "2023.06" | |
| upload_artifact: true | |
| - version: "5.0.1" | |
| eessi_modules: ESPResSo/5.0.1-foss-2025a | |
| eessi_stack_version: "2025.06" | |
| upload_artifact: false | |
| name: ubuntu - ESPResSo ${{ matrix.espresso.version }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@main | |
| - name: Validate CITATION.cff | |
| uses: dieghernan/cff-validator@v5 | |
| with: | |
| install-r: true # Ensure R is explicitly installed | |
| - name: Setup EESSI | |
| uses: eessi/github-action-eessi@v3 | |
| with: | |
| eessi_stack_version: ${{ matrix.espresso.eessi_stack_version }} | |
| - name: Install dependencies | |
| uses: ./.github/actions/dependencies | |
| with: | |
| modules: |- | |
| ${{ matrix.espresso.eessi_modules }} | |
| extra-python-packages: |- | |
| pdoc==15.0.3 | |
| pylint==3.0.3 | |
| coverage==7.4.4 | |
| - name: Run testsuite | |
| run: | | |
| export NUM_PROC=$(nproc) | |
| export OMP_PROC_BIND=false OMP_NUM_THREADS=1 | |
| module restore pymbe | |
| source venv/bin/activate | |
| make pylint | |
| make unit_tests -j${NUM_PROC} COVERAGE=1 | |
| make docs | |
| make coverage_xml | |
| shell: bash | |
| - name: Upload artifact | |
| if: ${{ matrix.espresso.upload_artifact }} | |
| uses: actions/upload-artifact@v7 | |
| with: | |
| path: "./documentation" | |
| name: documentation | |
| retention-days: 2 | |
| if-no-files-found: error | |
| - name: Upload coverage to Codecov | |
| if: ${{ github.repository == 'pyMBE-dev/pyMBE' }} | |
| uses: codecov/codecov-action@v7 | |
| with: | |
| files: "./coverage.xml" | |
| disable_search: true | |
| env_vars: OS,PYTHON | |
| fail_ci_if_error: false | |
| flags: unittests | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| verbose: true |