Issues

• Support proportional chunks

  Feature

  sgkit-dev/bio2zarr#495 · Filter by author jeromekelleher opened on Jun 8, 2026

• Support writing to Icechunk

  enhancement
  sgkit-dev/bio2zarr#489 · Filter by author tomwhite opened on May 6, 2026

• Support Zarr format v3 as part of the API

  sgkit-dev/bio2zarr#482 · Filter by author jeromekelleher opened on Apr 22, 2026
  2

• Update tests to support xarray >= 2025.03.1

  sgkit-dev/bio2zarr#458 · Filter by author jeromekelleher opened on Apr 1, 2026

• Add testing module with basic facilities

  sgkit-dev/bio2zarr#444 · Filter by author jeromekelleher opened on Feb 9, 2026
  1

• New format: BGEN

  enhancement
  sgkit-dev/bio2zarr#417 · Filter by author jeromekelleher opened on Aug 7, 2025

• Add "overwrite" functionality to Python API

  sgkit-dev/bio2zarr#415 · Filter by author hyanwong opened on May 30, 2025
  3

• Documented VCZ writer API

  enhancement
  sgkit-dev/bio2zarr#412 · Filter by author jeromekelleher opened on May 23, 2025

• Add memory control options to plink and tskit CLIs

  enhancement
  sgkit-dev/bio2zarr#410 · Filter by author jeromekelleher opened on May 23, 2025

• Optimise pandas usage for read_bim and read_fam

  enhancement
  sgkit-dev/bio2zarr#409 · Filter by author jeromekelleher opened on May 23, 2025

• Improve Python API documention

  documentation
  sgkit-dev/bio2zarr#407 · Filter by author jeromekelleher opened on May 23, 2025

• Add support for coordinate handling in tskit

  enhancement
  sgkit-dev/bio2zarr#405 · Filter by author jeromekelleher opened on May 23, 2025

• Review Format/Source API and make pickling requirements explicit

  enhancement
  sgkit-dev/bio2zarr#403 · Filter by author jeromekelleher opened on May 23, 2025

• Add contig_length to plink output

  enhancement
  sgkit-dev/bio2zarr#394 · Filter by author jeromekelleher opened on May 21, 2025

• Add the "provisional reference" flag to plink output

  enhancement
  sgkit-dev/bio2zarr#393 · Filter by author jeromekelleher opened on May 21, 2025

• Add sample fields to plink conversion

  enhancement
  sgkit-dev/bio2zarr#392 · Filter by author jeromekelleher opened on May 21, 2025

• ALT and REF alleles incorrect in plink conversion

  sgkit-dev/bio2zarr#391 · Filter by author jeromekelleher opened on May 20, 2025
  1

• Add AC and AN after tskit to zarr conversion

  enhancement
  sgkit-dev/bio2zarr#386 · Filter by author Duncan-JR opened on May 13, 2025
  1

• Add option of zipping output of convert/encode

  enhancement
  sgkit-dev/bio2zarr#376 · Filter by author jeromekelleher opened on May 9, 2025

• VCF to VCZ encode zarr conversion leads to Disk Quota Exceeded (by generating a wild amount of files)

  sgkit-dev/bio2zarr#366 · Filter by author moshejasper opened on May 6, 2025
  14

• How to make a small zarr file from a large VCF?

  sgkit-dev/bio2zarr#365 · Filter by author hyanwong opened on May 2, 2025
  4

• Error on converting GWAS-VCF files

  bug
  sgkit-dev/bio2zarr#345 · Filter by author jeromekelleher opened on Apr 6, 2025
  1

• dencode cannot partition in samples dimension?

  sgkit-dev/bio2zarr#341 · Filter by author rajwanir opened on Apr 2, 2025
  3

• Document supported input formats for vcf2zarr and partitioning rules

  sgkit-dev/bio2zarr#338 · Filter by author jeromekelleher opened on Mar 28, 2025

• Explicitly setting fill-values

  sgkit-dev/bio2zarr#320 · Filter by author jeromekelleher opened on Feb 4, 2025
  1