brainextractor/pyproject.toml at main · vanandrew/brainextractor · GitHub

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[project]
name = "brainextractor"
description = "brain extraction in python"
readme = "README.md"
requires-python = ">=3.11"
license = "MIT"
authors = [{ name = "Andrew Van", email = "vanandrew@wustl.edu" }]
keywords = [
    "python",
    "image-processing",
    "neuroscience",
    "neuroimaging",
    "segmentation",
    "fsl",
    "brain-extraction",
    "skull-stripping",
]
classifiers = [
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Programming Language :: Python :: 3.14",
    "Programming Language :: C++",
    "Topic :: Scientific/Engineering :: Image Processing",
]
urls = { github = "https://github.com/vanandrew/brainextractor" }
version = "0.3.0"
dependencies = [
    "numba >= 0.59.0",
    "nibabel >= 5.0.0",
    "trimesh >= 4.0.0",
    "numpy >= 1.24.0",
    "scipy >= 1.11.0",
    "pyrender >= 0.1.45",
]

[project.scripts]
brainextractor = "brainextractor.scripts.brainextractor:main"
brainextractor_render = "brainextractor.scripts.brainextractor_render:main"

[build-system]
requires = ["setuptools >= 61.0", "wheel"]
build-backend = "setuptools.build_meta"

[tool.setuptools]
zip-safe = true

[tool.setuptools.packages.find]
include = ["brainextractor*"]

[dependency-groups]
dev = [
    "ruff >= 0.8.0",
    "pre-commit >= 3.7.0",
    "pytest >= 8.0",
    "pytest-cov >= 5.0",
]

[tool.ruff]
line-length = 120
target-version = "py311"

[tool.ruff.lint]
select = [
    "E",   # pycodestyle errors
    "W",   # pycodestyle warnings
    "F",   # pyflakes
    "I",   # isort
    "UP",  # pyupgrade
    "B",   # flake8-bugbear
]
ignore = [
    "E203",  # whitespace before ':'
    "E741",  # ambiguous variable name (project uses single-letter math vars)
    "E501",  # line-too-long (black handles this)
]

[tool.ruff.lint.per-file-ignores]
"tests/*" = ["B"]

[tool.pytest.ini_options]
testpaths = ["tests"]
addopts = "-ra --strict-markers"