Bioconductor GitHub Actions Workflows

This repository (bioconductor/workflows) hosts reusable GitHub Actions workflows for R/Bioconductor package development.

NOTE: This is pre-release. Please try it and file issues, but some things may not work yet. The first stable release will be tagged v1.

Overview: Two Complementary Testing Patterns

Two complementary workflows are available depending on your testing goals:

Purpose	Workflow Reference	Target Environment	Managed By
1. Rapid Feedback Check	`bioconductor/workflows/.github/workflows/bioccheck.yml@main`	Linux (`bioconductor_docker` container)	Bioconductor Core Team / Maintainers
2. Comprehensive Pre-Release Check	`r-universe-org/workflows/.github/workflows/build.yml@v3`	Multi-OS (Linux, macOS, Windows, WebAssembly) + `BiocCheck`	R-Universe Team

The documentation for these workflows has been separated into distinct files for clarity:

BiocCheck Usage: Comprehensive instructions for using the bioccheck.yml reusable workflow, including test coverage and pkgdown setup.
R-Universe Usage: Instructions for using the comprehensive multi-platform R-Universe workflow.
Workflow Comparison: A detailed comparison of the two workflows to help you choose the right one for your needs.
Technical Notes: Software architecture, ADRs, internal test flows (canary.yml, actionlint.yml), and guidelines for contributors.

Name		Name	Last commit message	Last commit date
Latest commit History 33 Commits
.github		.github
adr		adr
docs		docs
vignettes		vignettes
DESCRIPTION		DESCRIPTION
LICENSE		LICENSE
README.md		README.md
bioccheck_usage.md		bioccheck_usage.md
ci.yml		ci.yml
r-universe-org_usage.md		r-universe-org_usage.md
technical_notes.md		technical_notes.md
workflow_comparison.md		workflow_comparison.md