This repository contains a pipeline for analyzing RNA-seq data.
The pipeline is outlined step by step in the Text document and steps are described in more detail in the Word doc.
Some of the steps are described in more detail in the Smithsonian tutorial here: https://github.com/SmithsonianWorkshops/2020-01-28-NMNH-RNAseq/ although I have made some adaptations that better interface with our cluster (e.g., I use Trimmomatic instead of TrimGalore).