All pull requests

Pull requests

• fix(security): widen the affiliation gate's coverage and scope its allowlists

  #656·Gavin-Borges opened Sep 29, 2026Owner·

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• test(deps): catch a NEW cross-file pin divergence in any CI job

  #655·Gavin-Borges opened Sep 29, 2026Owner·

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• test(hooks): let the hook suite catch a PCRE grep and a gate-4 SIGPIPE regression

  #654·Gavin-Borges opened Sep 29, 2026Owner·

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• fix(ci): derive the release gate's feature count from the mode's column list

  #653·Gavin-Borges opened Sep 29, 2026Owner·

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• fix(build): pin shell scripts and git hooks to LF so Linux can parse them

  #652·Gavin-Borges opened Sep 29, 2026Owner·

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• test(dataset): name the second REAL_NEG_ORIGINS literal so it is covered

  #651·Gavin-Borges opened Sep 29, 2026Owner·

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• fix(security): widen secret-scan coverage and cite its exemptions by symbol

  #650·Gavin-Borges opened Sep 29, 2026Owner·

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• test(provenance): bind the merged record's source to its identity

  #649·Gavin-Borges opened Sep 29, 2026Owner·

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• fix(security): scan tracked paths the leak sweep used to skip

  #648·Gavin-Borges opened Sep 29, 2026Owner·

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• fix(privacy): scan CHANGELOG.md for workstation paths like every other file

  #647·Gavin-Borges opened Sep 29, 2026Owner·

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• fix(scripts): make four documented by-path commands import their own tree

  #646·Gavin-Borges opened Sep 29, 2026Owner·

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• fix(singularity): verify the MHCflurry archive digest before the build trusts it

  #645·Gavin-Borges opened Sep 29, 2026Owner·

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• perf(benchmark): apply the model gate before fetching from IEDB

  #644·Gavin-Borges opened Sep 29, 2026Owner·

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• docs(gnn): disclose that the Gate 1 figures are the best of eight runs

  #643·Gavin-Borges opened Sep 29, 2026Owner·

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• test(packaging): guard src.verify package data at pr time and release

  #642·Gavin-Borges opened Sep 29, 2026Owner·

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• feat(release): derive the pre-publish import list instead of hardcoding it

  #641·Gavin-Borges opened Sep 29, 2026Owner·

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• fix(docs): the per-virus table is sliced from a pooled model, not trained per virus

  #640·Gavin-Borges opened Sep 29, 2026Owner·

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• test(qc-gate): bind the documented QC margin to the computed boundary

  #639·Gavin-Borges opened Sep 29, 2026Owner·

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• fix(provenance): fail closed when the dataset checksum pin is absent

  #638·Gavin-Borges opened Sep 29, 2026Owner·

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• fix(qc): adjudicate corpora carrying two spellings of one field

  #637·Gavin-Borges opened Sep 29, 2026Owner·

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• test(gnn): exercise the PyG-absent fallback class with object as its base

  #636·Gavin-Borges opened Sep 29, 2026Owner·

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• fix(integrity): the spare .joblib comparison falls on the estimator, not the booster

  #635·Gavin-Borges opened Sep 29, 2026Owner·

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• test(corpus): make the active row guard see every published carrier

  #634·Gavin-Borges opened Sep 29, 2026Owner·

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• fix(stage4): honour the caller's output directory when plotting

  #633·Gavin-Borges opened Sep 29, 2026Owner·

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• fix(data): stop fabricating an allele for every Schmidt row

  #632·Gavin-Borges opened Sep 29, 2026Owner·

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