GitHub - GeneticsHarm/PBMC-analysis-scripts: R scripts used for the analysis of 33k PBMCs

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
markdown		markdown
normalization		normalization
.gitignore		.gitignore
GeneNetwork.R		GeneNetwork.R
Rplot.png		Rplot.png
Rplot01.png		Rplot01.png
Rplot02.png		Rplot02.png
Rplot03.png		Rplot03.png
Rplot04.png		Rplot04.png
Rplot05.png		Rplot05.png
Rplot06.png		Rplot06.png
Rplot07.png		Rplot07.png
Rplot08.png		Rplot08.png
Stage.Rproj		Stage.Rproj
VO2_max.R		VO2_max.R
bimodal.R		bimodal.R
cell_type_correlation.R		cell_type_correlation.R
cell_type_percentages.R		cell_type_percentages.R
corr_spearman.R		corr_spearman.R
deAnonymize_pilot_3_4.R		deAnonymize_pilot_3_4.R
deAnonymize_pilot_4.R		deAnonymize_pilot_4.R
disease_genes.R		disease_genes.R
doublet_score.R		doublet_score.R
eqtl_box_plots.R		eqtl_box_plots.R
eqtl_sample.R		eqtl_sample.R
immune_disease_genes.R		immune_disease_genes.R
lane_2_man_female.R		lane_2_man_female.R
mad_sd_cut-offs.R		mad_sd_cut-offs.R
merged_6_8k.R		merged_6_8k.R
multiplot.R		multiplot.R
non-zero-values.R		non-zero-values.R
pbmc33k.R		pbmc33k.R
pbmc33k_seurat.R		pbmc33k_seurat.R
pc_outliers.R		pc_outliers.R
pilot3_aggr.R		pilot3_aggr.R
pilot3_clustering.R		pilot3_clustering.R
pilot3_lane7.R		pilot3_lane7.R
pilot_4_doublets.R		pilot_4_doublets.R
poly_a.R		poly_a.R
samples_rna_s.R		samples_rna_s.R
snp_probe_file.R		snp_probe_file.R
snps_compare.R		snps_compare.R
tsne_outliers.R		tsne_outliers.R
violin_plots_pilot3.R		violin_plots_pilot3.R
wilcox_test_spearman.R		wilcox_test_spearman.R

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R scripts used for the analysis of 33k PBMCs

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