Issues

• biomaRt::getBM results in "Error in httr2::req_perform(): ! HTTP 405 Method Not Allowed."

  upstream
  Huber-group-EMBL/biomaRt#170 · Filter by author mvheetve opened on Sep 15, 2026
  5

• No result for biomaRt::getSequence when using small batches

  Huber-group-EMBL/biomaRt#154 · Filter by author le-raman opened on Nov 18, 2025
  6

• error in getBM()

  reprex-needed
  Huber-group-EMBL/biomaRt#151 · Filter by author jiapinxiu opened on Sep 22, 2025
  1

• Replace progress dependency by cli

  Huber-group-EMBL/biomaRt#149 · Filter by author Bisaloo opened on Sep 19, 2025
  

• useMart and listEnsembl : Timeout was reached. Unable to query any Ensembl site

  Huber-group-EMBL/biomaRt#119 · Filter by author corinabioinformatic opened on Apr 7, 2025
  3

• getBM won't return cdna and peptide together

  Huber-group-EMBL/biomaRt#115 · Filter by author kwells4 opened on Jan 27, 2025
  1

• Erroneous residues at the end of peptide sequences

  Huber-group-EMBL/biomaRt#112 · Filter by author KoppGergely opened on Oct 2, 2024

• pberghei_eg_gene geneset have all genes missing as compared to PlasmoDB

  Huber-group-EMBL/biomaRt#110 · Filter by author Rohit-Satyam opened on Aug 17, 2024
  7

  

• getLDS function query.....

  Huber-group-EMBL/biomaRt#106 · Filter by author Shikari666 opened on Jul 1, 2024

• Error getLDS()

  Huber-group-EMBL/biomaRt#100 · Filter by author Kan-E opened on Mar 21, 2024
  2

• Error choosing mirror

  Huber-group-EMBL/biomaRt#99 · Filter by author Merguerrero opened on Mar 21, 2024

• More robustness against ensemble errors

  Huber-group-EMBL/biomaRt#97 · Filter by author Mitmischer opened on Mar 15, 2024
  1

  

• Wrong results returned for queries of multiple genes

  Huber-group-EMBL/biomaRt#96 · Filter by author Mitmischer opened on Mar 15, 2024

• ensembl_peptide_id_version in zebrafish?

  Huber-group-EMBL/biomaRt#92 · Filter by author marwa38 opened on Dec 27, 2023

• Possible SSL connectivity problems detected: How can I possibly fix this?

  Huber-group-EMBL/biomaRt#87 · Filter by author Shrishtee-kandoi opened on Sep 14, 2023
  2

• how to convert cpg id's to genes using biomart in R

  Huber-group-EMBL/biomaRt#86 · Filter by author reem0331 opened on Aug 25, 2023

• Error: biomaRt has encountered an unknown server error. HTTP error code: 502（404）

  Huber-group-EMBL/biomaRt#85 · Filter by author AndoYutaro opened on Aug 3, 2023
  1

• Error in curl::curl_fetch_memory(url, handle = handle)

  Huber-group-EMBL/biomaRt#84 · Filter by author powerhorse1986 opened on Jul 20, 2023

• Non protein_coding biotypes

  Huber-group-EMBL/biomaRt#83 · Filter by author AHinsu opened on Jul 6, 2023

• Error: biomaRt has encountered an unknown server error. HTTP error code: 404

  Huber-group-EMBL/biomaRt#82 · Filter by author hyjforesight opened on Jun 19, 2023
  1

• GEDI package

  Huber-group-EMBL/biomaRt#77 · Filter by author Maryan12m opened on Jun 2, 2023
  2

  

• How to obtain actual position of all CpG sites in GRCm38 mouse genome?

  Huber-group-EMBL/biomaRt#73 · Filter by author kaanokay opened on Nov 25, 2022

• Ensembl site unresponsive, trying useast mirror

  Huber-group-EMBL/biomaRt#70 · Filter by author Shicheng-Guo opened on Oct 12, 2022
  1

• Error with getBM with certain attributes ("go_id")

  Huber-group-EMBL/biomaRt#69 · Filter by author licmn opened on Aug 31, 2022
  1

• Support for SurePrint G3 Human Gene Expression v3 8x60K Microarray Kit

  upstream
  Huber-group-EMBL/biomaRt#68 · Filter by author SamThilmany opened on Jun 27, 2022