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Improve package functions and documentation - #1

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JustSplash8501 merged 1 commit into
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codex/package-quality
Aug 5, 2026
Merged

Improve package functions and documentation#1
JustSplash8501 merged 1 commit into
masterfrom
codex/package-quality

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Summary

  • Keep the private Shiny application, deployment metadata, web assets, and secrets outside the R package and GitHub build context.
  • Add the hosted MeatColor Lab Explorer teaching link to the README.
  • Add tidyverse-friendly CIELAB hue and chroma functions.
  • Add selected-wavelength and calibrated K/S myoglobin calculations.
  • Configure and pin roxygen2, generated documentation, contributor guidance, and documentation-drift CI.
  • Strengthen finite-value and reflectance-scale validation.
  • Expand tests, package documentation, NEWS, and the introductory vignette.

Why

This keeps the repository focused on its public R-package purpose while making the package APIs easier and safer to use for meat-color analysis. It also makes documentation generation reproducible and prevents invalid scientific inputs from silently producing results.

Validation

  • 196 test expectations pass.
  • Roxygen generation is idempotent.
  • A clean source build succeeds.
  • R CMD check without the PDF manual completes with Status: OK.
  • Examples and vignettes build successfully.

@JustSplash8501
JustSplash8501 merged commit 205bc04 into master Aug 5, 2026
4 of 5 checks passed
@JustSplash8501
JustSplash8501 deleted the codex/package-quality branch August 5, 2026 15:42
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