[OC-833] mergesqlite: add postaggregator recompute - #421
Open
cvaske wants to merge 2 commits into
Open
Conversation
Strip stale postaggregator-authored columns from the merged db and re-run tagsampler/casecontrol/varmeta/vcfinfo (or -p additions) against the merged sample set, via --skip-postaggregator, -p, and --module-option flags on `oc util mergesqlite`.
cvaske
changed the title
cvaske
marked this pull request as draft
August 21, 2026 19:09
cvaske
marked this pull request as ready for review
August 21, 2026 20:27
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
When merging sqlite database files, postaggregator annotators' information can't be cleanly merged between different variants, and must be recomputed.
Case control information can be recomputed by providing a
--module-optionflag defining the sample metadata.Note that this is based off of the changes in #420 and should only be merged after it.