Lange Lab

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1. SQuAPP SQuAPP Public

   Shiny App allows streamlined analysis of multiple levels of proteomics data.

   R 10 3

2. RoLiM RoLiM Public

   Detection of statistically enriched patterns in sequence data sets.

   Python 4

3. ProteoForge_Analysis ProteoForge_Analysis Public

   All the scripts and notebooks used to produce the data written in the manuscript titled "ProteoForge: An Imputation-Aware Framework for Differential Proteoform Discovery in Bottom-Up Proteomics".

   Jupyter Notebook 4 2

4. pepVet pepVet Public

   pepVet is an R package for proteolytic digest simulation, peptide-set scoring, enzyme comparison, and workflow preset selection for bottom-up proteomics.

   R 3

5. pxseek pxseek Public

   Automated web scraper to collect and filter pediatric cancer datasets from ProteomeXchange.

   Python 2

6. Library-Filtering Library-Filtering Public

   Script to filter spectral libraries from Spectronaut or DiaNN for peptides with fragments that support biotin modification at the peptide N terminus.

   Python 2