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Desorption criterion update, Site classification bugfix - #492

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Alexsp32 wants to merge 9 commits into
surface-site-classification-2from
mdef-ttm-rerun
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Desorption criterion update, Site classification bugfix#492
Alexsp32 wants to merge 9 commits into
surface-site-classification-2from
mdef-ttm-rerun

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@Alexsp32

@Alexsp32 Alexsp32 commented Jun 1, 2026

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Alexsp32 added 9 commits June 1, 2026 13:29
Desorption frame logic in OutputDesorptionTrajectory now uses the H-H distance and H2-surface distance to determine the desorption transition state as the moment where the H-H distance decreases below the H-surface distance for the first time before desorption, where desorption is defined as the H2 centre of mass being above a distance threshold from the highest non-H atom in surface normal direction.
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Created for wrong branch

@Alexsp32 Alexsp32 closed this Jul 21, 2026
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