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@NW-PaGe

The Northwest Pathogen Genomics Center of Excellence

README.md

Welcome! 👋

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🙋‍♀️ This is the Github Org for the Northwest Pathogen Genomics Center of Excellence.

🌈 Please review the contributing guides for details on how to contribute to a project

🌈 Please review our GitHub guide

👩‍💻 Check out our website! https://nwpage.org/

🍿 Fun facts - what does your team eat for breakfast?

Popular repositories Loading

  1. bigbacter bigbacter Public

    Bacterial surveillance pipeline.

    Nextflow 30 7

  2. vaper vaper Public

    Viral (meta)-genome assembly pipeline.

    Nextflow 23 2

  3. epitome epitome Public

    Pipeline for creating comprehensive viral reference sets.

    Python 12

  4. CorgiSNPs CorgiSNPs Public

    Fungal core genome analysis

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  5. covid_seq_elr covid_seq_elr Public

    Summarize and share COVID-19 Sequencing Metadata ELR data flow at the Washington State Department of Health

    R 3

  6. lineage_classifications lineage_classifications Public

    The lineage_classifications.csv file is maintained by the WA DOH Molecular Epidemiology Program in order to group the lineages for the Sequencing & Variants Report.

    R 2

Repositories

Showing 10 of 39 repositories
  • measles Public Forked from nextstrain/measles

    Nextstrain build for measles virus

    NW-PaGe/measles's past year of commit activity
    Python 0 9 0 0 Updated Sep 17, 2026
  • BacterialGenomicsSummaryOutput Public
    NW-PaGe/BacterialGenomicsSummaryOutput's past year of commit activity
    R 0 MIT 0 2 1 Updated Sep 16, 2026
  • polycore Public

    Ploidy-aware core genome analysis

    NW-PaGe/polycore's past year of commit activity
    Python 2 0 0 0 Updated Sep 15, 2026
  • avian-flu-whole-genome Public

    avian flu whole genome Nextstrain build

    NW-PaGe/avian-flu-whole-genome's past year of commit activity
    Python 0 GPL-3.0 1 8 0 Updated Sep 15, 2026
  • wadoh_raccoon Public

    Python package for transforming and linking pathogen sequencing/subtyping metadata

    NW-PaGe/wadoh_raccoon's past year of commit activity
    Python 2 MIT 0 22 1 Updated Sep 14, 2026
  • mpox Public Forked from nextstrain/mpox

    Nextstrain build for mpox virus

    NW-PaGe/mpox's past year of commit activity
    Python 0 MIT 22 0 0 Updated Sep 9, 2026
  • rsv Public Forked from nextstrain/rsv

    Workflow for RSV analyses on Nextstrain.org

    NW-PaGe/rsv's past year of commit activity
    Python 0 7 1 0 Updated Sep 9, 2026
  • lineage_classifications Public

    The lineage_classifications.csv file is maintained by the WA DOH Molecular Epidemiology Program in order to group the lineages for the Sequencing & Variants Report.

    NW-PaGe/lineage_classifications's past year of commit activity
    R 2 MIT 0 1 2 Updated Sep 8, 2026
  • gisaid-cleaning-automation Public

    cleaning scripts for GISAID flu data and automation of those scripts

    NW-PaGe/gisaid-cleaning-automation's past year of commit activity
    R 0 0 0 0 Updated Sep 8, 2026
  • vaper Public

    Viral (meta)-genome assembly pipeline.

    NW-PaGe/vaper's past year of commit activity
    Nextflow 23 MIT 2 4 1 Updated Sep 8, 2026
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