CLI settings updates - #2212
Merged
Merged
CLI settings updates#2212
Conversation
jthorton
commented
Sep 25, 2026
| exit 1 | ||
| fi | ||
| for repeat in {0..2}; do | ||
| cmd="openfe quickrun ${file} -o results_${repeat}/${relpath} -d results_${repeat}/${dirpath} --n-protocol-repeats 1" |
Collaborator
Author
There was a problem hiding this comment.
This is not a valid flag for quickrun and needs to be removed.
IAlibay
approved these changes
Sep 25, 2026
jthorton
enabled auto-merge (squash)
September 25, 2026 10:20
IAlibay
disabled auto-merge
September 25, 2026 10:43
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Description
Fixes #1591
LLM / AI generated code disclosure
LLMs or other AI-powered tools (beyond simple IDE use cases) were used in this contribution: yes / no
If yes, please provide details here:
Checklist
newsentry, or the changes are not user-facing.pre-commit.ci autofix.Manual Tests: these are slow so don't need to be run every commit, only before merging and when relevant changes are made (generally at reviewer-discretion).
Developers certificate of origin