pcdl release v4.1.0 - #41

Merged

elmbeech merged 14 commits into

PhysiCell-Tools:masterfrom

elmbeech:master

Dec 31, 2025

Commits on Nov 13, 2025

@ man : add github repo qr code and concept figure.
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Commits on Nov 15, 2025

@ man : update with input from the talk at the fertiglab meeting.
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@ man : update with input from the talk at the fertiglab meeting.
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Merge branch 'v4'.
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Commits on Dec 30, 2025

@ pcdl : in the middle of get_spatialdata function implementation.
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@ pcdl : add get_spatialdata timestep 2d tests.
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@ pcdl : add get_spatialdata timestep 3d and timeseries 2d and 3d tests.
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@ man : update physicelldataloader_concept_v4.0.0 figure.
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@ mcds.get_spatialdata : fix mircoenv not loaded error.
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@ pcdl : writing dask arrays (points) to a zarr file only works flawlessly with spatialdata >= 0.6.0 which requires python >= 3.11.
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@ workflows : as of now, python vtk still has issues with python 3.14. this should resolve over time, hopefully.
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Commits on Dec 31, 2025

@ man : update documentation to mention spatialdata.
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@ pcdl : final tweaks on the get_spatialdata function implementation.
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@ physicelldataloader : release v4.1.0.
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