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1. PureML PureML Public

   Transparent, NumPy-only deep learning framework for teaching, small-scale projects, prototyping, and reproducible experiments. No CUDA, no giant dependency tree. Batteries included: VJP autograd, l…

   Python 12

2. SAWNERGY SAWNERGY Public

   Toolkit for transforming molecular dynamics (MD) trajectories into rich graph representations, sampling random and self-avoiding walks, learning node embeddings, and visualising residue interaction…

   Python 1

3. microbiome2function microbiome2function Public

   Forked from BonhamLab/microbiome2function

   UniProt-to-ML toolkit for microbiome function prediction with cleaning, embeddings, and GNN/FFNN data interfaces.

   Python

4. passvault passvault Public

   A terminal-first C++ secrets manager for securely storing passwords, API keys, tokens, database credentials, recovery codes, and private notes in an encrypted local vault. Designed for developers, …

   C++

5. Knowledge-Base Knowledge-Base Public

   Forked from ThayerLab-Wesleyan-University/Knowledge-Base

   A centralized collection of ThayerLab publications, theses, and research materials, along with curated links to relevant external papers and literature.

   Python

6. algorithms-and-data-structures algorithms-and-data-structures Public

   Foundational algorithms and data structures implemented in OCaml

   OCaml