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1. Danko-Lab/clipnet Danko-Lab/clipnet Public

   A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution

   Jupyter Notebook 15 3

2. kundajelab/procap-atlas kundajelab/procap-atlas Public

   Preprocessing and deep learning-based analysis of the ENCODE PRO-cap atlas

   Python 1

3. pydreg pydreg Public

   pydreg: a fast Python package for identifying active cis-regulatory elements from nascent transcription

   Python 6

4. LDetect-lite LDetect-lite Public

   Fast calculation of approximately independent linkage disequilibrium blocks

   Python 5 1

5. genomicsxai/promoterai-torch genomicsxai/promoterai-torch Public

   A PyTorch port of PromoterAI

   Python

6. TROGDOR TROGDOR Public

   Transcription Run-On Grants Detection Of Regulatory elements (TROGDOR).

   Python 1