Issues

• How to filter

  cancerit/BRASS#121 · Filter by author LB1907 opened on Jan 21, 2025

• No data survived filtering

  cancerit/BRASS#119 · Filter by author ruolin opened on Feb 28, 2024

• Security vulnerabilities in current container image

  cancerit/BRASS#118 · Filter by author verdurin opened on Jul 26, 2023

• Iterations must be a positive integer: 0 at /opt/wtsi-cgp/bin/brass.pl line 83.

  cancerit/BRASS#117 · Filter by author DingTin opened on Apr 23, 2023
  2

• No read groups listed

  cancerit/BRASS#115 · Filter by author bettinabudeus opened on Feb 15, 2023

• Poor inversion recall performance in BAM files with a high amount of variants

  cancerit/BRASS#114 · Filter by author Rapsssito opened on Feb 10, 2023
  3

• Any way to ignore PL in bam?

  cancerit/BRASS#112 · Filter by author anoronh4 opened on Sep 19, 2022
  4

• Should be an existing file

  cancerit/BRASS#111 · Filter by author mdbarnesUCSD opened on Jun 18, 2022
  1

• getting POS of 0

  cancerit/BRASS#110 · Filter by author anoronh4 opened on May 16, 2022
  7

• Regions of excessive sequencing depth for hg38

  cancerit/BRASS#109 · Filter by author zhujack opened on May 9, 2022
  1

• less *.ngscn.segments.abs_cn.bg | cut -f1 | sort -u 1 2 3 4 5 6 7 8 9 X Y

  bug
  cancerit/BRASS#106 · Filter by author jsmedmar opened on Jan 17, 2022
  3

• duplicate records for inversions

  cancerit/BRASS#105 · Filter by author sb43 opened on Oct 12, 2021

• Bedtools problem with get_rg_cns.R

  cancerit/BRASS#104 · Filter by author jsmedmar opened on Mar 1, 2021

• Issue with creating tmp directory

  cancerit/BRASS#102 · Filter by author anoronh4 opened on Nov 4, 2020

• Performance improvement - input step

  cancerit/BRASS#100 · Filter by author keiranmraine opened on Jun 29, 2020

• Document docker/singularity

  documentation
  cancerit/BRASS#97 · Filter by author keiranmraine opened on Jun 9, 2020

• unused argument (cytoband_file = cytoband_file) - caused by Rlib - gam incompatibility

  cancerit/BRASS#91 · Filter by author podro182 opened on Dec 6, 2019
  4