Issues

• question about the input data (SE ?)

  cancerit/cgpCaVEManWrapper#64 · Filter by author panyuwen opened on Jul 10, 2025
  1

• Ask for an unmatched synthetic normal genome file when calling SNVs with CaVEMan

  cancerit/cgpCaVEManWrapper#63 · Filter by author zhangzhen opened on Mar 25, 2025

• protocol and seq_type are different

  cancerit/cgpCaVEManWrapper#58 · Filter by author davidrajones opened on Mar 24, 2022
  1

• if -index 1 is passed with -p flag only one split file is flagged

  bug
  cancerit/cgpCaVEManWrapper#55 · Filter by author jsmedmar opened on Aug 11, 2020
  3

• arg default doesn't match cli help: read-count

  cancerit/cgpCaVEManWrapper#53 · Filter by author keiranmraine opened on Aug 7, 2020

• algorithm write up messed up

  cancerit/cgpCaVEManWrapper#49 · Filter by author keiranmraine opened on Apr 24, 2020

• Misleading variable in docker file

  cancerit/cgpCaVEManWrapper#45 · Filter by author keiranmraine opened on Nov 22, 2019

• flagging, species name differences

  cancerit/cgpCaVEManWrapper#41 · Filter by author lucystebbings opened on May 10, 2019

• caveman.pl - Undocumented option -x/-exclude

  cancerit/cgpCaVEManWrapper#40 · Filter by author keiranmraine opened on Apr 30, 2019
  2