chore: bump scDataLoader floor to 2.1.3 - #10
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Picks up: - scipy>=1.15 compat in additional_postprocess (jkobject/scDataLoader#34, fixes scDataLoader#32) - compound ontology id handling in translate() (jkobject/scDataLoader#33) - lamin init --modules bionty docs (lamindb 2.1.x)
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Pull request overview
Updates the project’s declared minimum version of scDataLoader to pick up upstream fixes mentioned in the PR description.
Changes:
- Bump
scDataLoaderdependency floor from>=2.1.1to>=2.1.3.
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| "torchdata>=0.7.1", | ||
| "lamindb[gcp]==2.1.1", | ||
| "scDataLoader>=2.1.1", | ||
| "scDataLoader>=2.1.3", | ||
| "simpler_flash>=1.3.5", |
Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## main #10 +/- ##
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Coverage 37.44% 37.44%
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Files 31 31
Lines 4310 4310
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Hits 1614 1614
Misses 2696 2696 ☔ View full report in Codecov by Sentry. 🚀 New features to boost your workflow:
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Picks up the freshly released scdataloader 2.1.3 (https://pypi.org/project/scdataloader/2.1.3/):
additional_postprocess(scDataLoader pre-processing for scprint-2 pretraining jkobject/scDataLoader#32, #34)translate()(fix: handle compound ontology ids in translate() jkobject/scDataLoader#33)lamin init --modules biontydocs (lamindb 2.1.x)No code changes needed on the scPRINT-2 side — both fixes were transparent.