Hello and welcome to marineSABRES WP5 Task 5.3 code sharing platform!

The /wapping4WP6 folder contains the functions developed in WP5 to be used in WP6 to place in the backend of the DSS.

• utils.R contains all functionality required for the analyses

• Demo.R contains a demo for Macaronesia with description of function input

The /FCM matrix projections folder includes the analyses and output from the PESTLE analyses.

The /R folder contains code for the qualitative (boolean) and semi-quantitative analyses of SES graphs.

• R code walkthrough of pipeline with ..r contains a rough version of the SES analysis pipeline

• loop_analysis.r goes through loop analysis of signed SES in R

• boolean.r goes through stability analyses for boolean network

Currently Boolean approaches are used as an entry point to understand a freshly produced SES and then move to semi-quantitative (loop analysis) for a subset of possible states as well as quantitative simulations (matrix projection) to answer more precise questions.