The HI-MC project aims to reconstruct 10mm^3 of the mouse hippocampal formation using EM connectomics. This repository contains sample code for analysis of data relevant to this project, principally using tools first developed by the Drosophila Connectomics Group in Cambridge for flies and now being adapted for larger brains.
- examples/allen_fmost_ingest shows ingest of Allen fMOST data
- examples/allen_fmost_transform demos transforms of neurons in Allen fMOST space to a uCT volume
- examples/qiu2024_nblast runs an all-by-all NBLAST for ~4k neurons of the Qiu et al. (2024) HPF dataset, see also Dryad dataset