All pull requests

Pull requests

• Add --doi and --conda_requirements to shed_lint

  #1729·jmchilton opened Sep 25, 2026Member·

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• Don't wipe collected outputs when a test names an undefined output

  #1728·jmchilton opened Sep 24, 2026Member·

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• Skip tests relying on quay.io, the Tool Sheds, Dockstore and usegalaxy.eu when they are down

  #1726·jmchilton opened Sep 24, 2026Member·

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• Make --test_data resolve tool test inputs

  #1725·jmchilton opened Sep 23, 2026Member·

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• Sanitize invocation labels used as filenames

  #1724·jmchilton opened Sep 22, 2026Member·

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• Fix silently skipped collection output assertions in workflow tests

  #1723·jmchilton opened Sep 22, 2026Member·

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• Add --use_async_submission to submit tool tests via the jobs API

  #1715·guerler opened Sep 16, 2026Contributor·

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• Apply Click conversion to configured option values

  #1714·jmchilton opened Sep 16, 2026Member·

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• Report standalone engine errors without crashing

  #1713·jmchilton opened Sep 16, 2026Member·

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• Fix no-wait Galaxy tool execution

  #1712·jmchilton opened Sep 15, 2026Member·

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• Use galaxy.util.wait.wait_on

  #1711·jmchilton opened Sep 15, 2026Member·

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• Fix shed_lint fail-fast behavior

  #1710·jmchilton opened Sep 14, 2026Member·

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• Replace Perl documentation example with Python

  #1709·jmchilton opened Sep 14, 2026Member·

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• Keep managed Galaxy running after tests

  #1708·jmchilton opened Sep 14, 2026Member·

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• Write inline test jobs outside source directories

  #1707·jmchilton opened Sep 14, 2026Member·

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• Modernize Planemo-specific tool linters

  #1706·jmchilton opened Sep 14, 2026Member·

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• Pin Galaxy virtualenvs to an explicit Python version

  #1704·jmchilton opened Sep 14, 2026Member·

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• List invocations across all workflows

  #1703·jmchilton opened Sep 14, 2026Member·

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• Run package-installed Galaxy through Gravity

  #1701·jmchilton opened Sep 11, 2026Member·

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• Allow anonymous access to external Galaxy instances

  #1700·jmchilton opened Sep 10, 2026Member·

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• Validate dates in IWC changelog headings

  #1697·jmchilton opened Sep 9, 2026Member·

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• Require workflow tests under the IWC lint profile

  #1695·jmchilton opened Sep 9, 2026Member·

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• Drop dead interactor.VERBOSE_GALAXY_ERRORS assignment

  #1684·jmchilton opened Aug 23, 2026Member·

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• Add uvx_galaxy engine type

  #1555·mvdbeek opened Jun 24, 2025Member·

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  6

• raise report level for some shed linting

  #1111·bernt-matthias opened Dec 15, 2020Collaborator·

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