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@iVis-at-Bilkent

i-Vis at Bilkent

i-Vis Research Lab at Bilkent University

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  1. pathway-mapper pathway-mapper Public

    PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

    TypeScript 62 27

  2. newt newt Public

    A web application to visualize and edit pathway models

    JavaScript 63 33

  3. cytoscape.js-view-utilities cytoscape.js-view-utilities Public

    A Cytoscape.js extension to provide miscellenaous view utilities such as hiding and highlighting nodes/edges

    HTML 54 9

  4. cytoscape.js-expand-collapse cytoscape.js-expand-collapse Public

    A Cytoscape.js extension to expand/collapse nodes for better management of complexity of compound graphs

    JavaScript 140 43

  5. cytoscape.js-layout-utilities cytoscape.js-layout-utilities Public

    Miscellaneous utilities for placement of nodes or components complementary to a main layout algorithm

    TypeScript 18 7

  6. cytoscape.js-layout-service cytoscape.js-layout-service Public archive

    Web-service on cytoscape.js to layout graphs

    JavaScript 10 2

Repositories

Showing 10 of 55 repositories
  • newt Public

    A web application to visualize and edit pathway models

    iVis-at-Bilkent/newt's past year of commit activity
    JavaScript 63 LGPL-3.0 33 62 0 Updated Sep 21, 2026
  • sbgnviz.js Public

    A web based visualization tool for process description maps in SBGN

    iVis-at-Bilkent/sbgnviz.js's past year of commit activity
    JavaScript 35 LGPL-3.0 23 5 1 Updated Sep 18, 2026
  • sybvals Public

    SyBValS: Systems Biology Validation Service

    iVis-at-Bilkent/sybvals's past year of commit activity
    JavaScript 3 MIT 0 3 0 Updated Aug 28, 2026
  • cose-base Public

    Core module for compound spring embedder based layout styles

    iVis-at-Bilkent/cose-base's past year of commit activity
    JavaScript 11 MIT 3 1 1 Updated Aug 10, 2026
  • cytoscape.js-hyse Public

    Hybrid Spring Embedder

    iVis-at-Bilkent/cytoscape.js-hyse's past year of commit activity
    TypeScript 3 MIT 0 5 0 Updated Aug 6, 2026
  • pangenographer Public

    PanGenoGrapher (PG2): A tool for visual analysis of Pan Genomes using graphs

    iVis-at-Bilkent/pangenographer's past year of commit activity
    TypeScript 9 MIT 1 2 0 Updated Jul 6, 2026
  • software-artifact-analyzer Public

    SAA: A tool to visually analyze varying software artifacts including source code files, pull requests, issues, and commits, as well as their links and their relationships with developers in a software project to improve the software development process

    iVis-at-Bilkent/software-artifact-analyzer's past year of commit activity
    TypeScript 1 3 14 1 Updated Jun 29, 2026
  • cytoscape.js-grid-guide Public

    A Cytsocape.js extension to provide a framework for grid interactions such as grid lines and snapping to grid, and guidelines and snap support for alignment of nodes.

    iVis-at-Bilkent/cytoscape.js-grid-guide's past year of commit activity
    JavaScript 60 MIT 12 12 3 Updated Jun 26, 2026
  • cytoscape.js-edge-editing Public

    A Cytoscape.js extension enabling interactive editing of edge anchor (bend or control) points

    iVis-at-Bilkent/cytoscape.js-edge-editing's past year of commit activity
    JavaScript 47 MIT 23 6 0 Updated Jun 26, 2026
  • chise.js Public

    A web application to visualize and edit the pathway models represented by SBGN Process Description Notation

    iVis-at-Bilkent/chise.js's past year of commit activity
    JavaScript 16 LGPL-3.0 10 6 0 Updated Jun 24, 2026
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