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marcellobeltrami/README.md

Hello there! 👋

My name is Marcello Beltrami and this is GitHub profile! I'm passionate about software development for bioinformatics, data analysis pipeline development, and 3D printing. Here you'll find a variety of projects I carried out because coding is just fun and incredibly addictive.

About Me

  • 🤖 AI and virology PhD student at the University of Strathclyde under Dr. Didier Devaurs.
  • 🧬 Bioinformatician at the University of York Mason Lab with focus pipeline development, genomics data processing and analysis.
  • 🌐 Interested in exploring low level tool development for bioinformatics.
  • 🔭 Focus on custom performant and reproducible pipelines in Nextflow.
  • 🎓 Bachelor's degree in Microbiology (1st Class). Master's degree in Bioinformatics (Distinction)

Projects and Languages

Here are a few projects I've been working on:

  • rocketfasta: A CLI parser for fasta files written in C++.
  • VCF annotator: A VCF annotator written in Python for with bindings to the Open Cravat API.
  • AMR_Prediction: A small project encopassing the training, testing and deployment of a Neural Network to predict antimicrobial resistance.
  • LamaRizer: A CLI application to run locally hosted models and extract information from websearches and documents focusing on privacy.

Get in Touch

Feel free to reach out if you have any questions, suggestions, consultancy requests or collaboration ideas!

Thanks for stopping by! 😊

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  1. VCF_annotator VCF_annotator Public

    Software aiming at making VCF annotation, filtering and comparison more accessible.

    Python

  2. AMResistance AMResistance Public

    A predict AMR based on protein or DNA sequences

    Jupyter Notebook

  3. mlInspect mlInspect Public

    A python CLI utility to measure Torch/Tensorflow models performances and visualize the models interactively.

    Python

  4. BLASTWrapper BLASTWrapper Public

    A python blast wrapper to easily interact with BLAST API. Published on PyPI

    Python 1

  5. LamaRizer LamaRizer Public

    Locally run CLI app to search web and documents with locally hosted ollama models.

    Python

  6. rocketfasta rocketfasta Public

    FASTA Parser CLI Tool developed in C++

    C++