Repositories list

• cmr-multi

  Public
  MICCAI challenge: https://mwm2026.github.io/cmr-multi

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 4, 2026Sep 4, 2026

• onboarding-base-module

  Public
  MIT License

  •00 forks•22 stars•1010 issues•00 pull requests•Updated Aug 27, 2026Aug 27, 2026

• ggiraph-gggenomes

  Public
  Demo for basic interactivity on gggenomes plots with ggiraph

  HTML

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 3, 2026Jul 3, 2026

• starfish

  Public
  starfish: unified pipelines for image-based transcriptomics

  Python

  •

  MIT License

  •7171 forks•11 star•00 issues•11 pull request•Updated Jun 15, 2026Jun 15, 2026

• napari-itk-io

  Public
  File IO with itk for napari.

  Python

  •

  Apache License 2.0

  •44 forks•00 stars•00 issues•00 pull requests•Updated May 29, 2026May 29, 2026

• CTFd

  Public
  CTFs as you need them

  Python

  •

  Apache License 2.0

  •2.8k2.8k forks•00 stars•00 issues•00 pull requests•Updated May 28, 2026May 28, 2026

• stats-demos

  Public
  Shinylive statistic demos

  JavaScript

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• Fabry_Cardiac_Measures

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 20, 2026Apr 20, 2026

• Python_for_Bio

  Public
  Programming with Python course for master biosciences at the University of Würzburg (winter semester 24/25)

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 19, 2026Mar 19, 2026

• dcm2bids_convert

  Public
  Python tool to run DICOM to BIDS conversion - optionally using the official dcm2bids

  Python

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 17, 2026Feb 17, 2026

• ukbb_cardiac

  Public
  Some code for UK Biobank cardiac MR image analysis

  Python

  •

  Apache License 2.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Feb 6, 2026Feb 6, 2026

• cmr-dynamic-radiomics-stability

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 27, 2026Jan 27, 2026

• Fabry_WML_Quantification

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 23, 2026Jan 23, 2026

• torchio

  Public
  Medical imaging toolkit for deep learning

  Python

  •

  Apache License 2.0

  •280280 forks•00 stars•00 issues•00 pull requests•Updated Jan 20, 2026Jan 20, 2026

• f18-psma-pet-ct-ai

  Public
  Detection of local prostate cancer recurrence from PET/CT scans using deep learning

  Jupyter Notebook

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Oct 8, 2025Oct 8, 2025

• Papaya_UKB

  Public
  JavaScript

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 29, 2025Sep 29, 2025

• DTI_Processing_Snakemake

  Public
  Python

  •00 forks•22 stars•00 issues•00 pull requests•Updated Aug 14, 2025Aug 14, 2025

• mudRapp-seq

  Public
  In-situ sequencing with multiple direct RNA-assisted padlock probing (mudRapp-seq)

  Jupyter Notebook

  •

  MIT License

  •11 fork•22 stars•00 issues•00 pull requests•Updated Jun 10, 2025Jun 10, 2025

• minimal-git-example

  Public
  A minimal example to show how git works

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 4, 2025Mar 4, 2025

• shiny-gggenomes

  Public
  shiny/shinylive demo for gggenomes

  visualizationalignmentggplot+ 1

  visualizationalignmentggplotshiny-r

  JavaScript

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 30, 2024Sep 30, 2024

• Python_Course_WS23

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 12, 2024Jul 12, 2024

• metabarcoding_pipeline

  Public
  R

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 14, 2024Mar 14, 2024

• onboarding

  Public
  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jul 6, 2023Jul 6, 2023

• GWAS

  Public
  R

  •

  MIT License

  •99 forks•00 stars•00 issues•00 pull requests•Updated Apr 11, 2022Apr 11, 2022