Repositories list

• stimpack

  Public
  modular framework for precise multisensory stimulus generation in systems neuroscience

  pythonneurosciencevirtual-reality+ 5

  pythonneurosciencevirtual-realitypsychophysicsauditory-stimulationsystems-neuroscienceclosed-loop-experimentsvisual-stimulation

  Python

  •

  GNU General Public License v3.0

  •22 forks•88 stars•77 issues•11 pull request•Updated Aug 28, 2026Aug 28, 2026

• visanalysis

  Public
  Analysis environment for visprotocol imaging experiments

  Python

  •

  MIT License

  •11 fork•22 stars•00 issues•00 pull requests•Updated Aug 27, 2026Aug 27, 2026

• brukerbridge

  Public
  Python

  •00 forks•00 stars•33 issues•00 pull requests•Updated Aug 25, 2026Aug 25, 2026

• labpack-template

  Public template
  Lab-specific stimuli, config, and resources to be used with stimpack

  Python

  •

  GNU General Public License v3.0

  •11 fork•11 star•11 issue•00 pull requests•Updated Aug 15, 2026Aug 15, 2026

• brainsss

  Public
  Preprocessing of volumetric neural data on sherlock (motion correction, zscoring, etc)

  Jupyter Notebook

  •55 forks•55 stars•22 issues•22 pull requests•Updated Jul 17, 2026Jul 17, 2026

• flyvr

  Public
  Python

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026

• bifrost

  Public
  Template building and multi-modal registration

  Python

  •

  MIT License

  •77 forks•99 stars•22 issues•00 pull requests•Updated Oct 10, 2025Oct 10, 2025

• antspy-binary-mirror

  Public
  mirror of antspy 0.3.2 binary, no longer available on PyP

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 10, 2025Oct 10, 2025

• sleep-analysis

  Public
  Library for analyzing Drosophila Activity Monitor data

  Jupyter Notebook

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 29, 2025Jul 29, 2025

• flystim

  Public
  Visual stimulus generator for neuroscience experiments

  pythonvirtual-realityscientific-computing+ 3

  pythonvirtual-realityscientific-computingvisual-stimulineuroscience-methodsthree-dimensional

  Python

  •

  MIT License

  •22 forks•55 stars•66 issues•00 pull requests•Updated Jan 15, 2025Jan 15, 2025

• visprotocol

  Public
  Visual stimulation protocol and metadata handler for flystim experiments

  Python

  •

  MIT License

  •00 forks•00 stars•33 issues•00 pull requests•Updated Jan 7, 2025Jan 7, 2025

• neurite

  Public
  Neural networks toolbox focused on medical image analysis

  Python

  •

  Apache License 2.0

  •7777 forks•00 stars•00 issues•00 pull requests•Updated Dec 9, 2024Dec 9, 2024

• multistim

  Public
  server/client and gui for presenting audio and visual stimuli to fruit flies

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 2, 2024Nov 2, 2024

• L1L2-recurrent-feedback

  Public
  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 22, 2024Mar 22, 2024

• modules

  Public
  Custom `lmod` modules for use on Sherlock

  Lua

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 29, 2024Jan 29, 2024

• voxelmorph

  Public
  Unsupervised Learning for Image Registration

  Python

  •

  Apache License 2.0

  •642642 forks•00 stars•00 issues•00 pull requests•Updated Jun 21, 2023Jun 21, 2023

• pystrum

  Public
  A general library of python tools

  Python

  •1313 forks•00 stars•00 issues•00 pull requests•Updated Jun 21, 2023Jun 21, 2023

• brezovec_volition_2023

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 9, 2023Jun 9, 2023

• flyrpc

  Public
  Library for managing server/client interactions

  Python

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 2, 2023Jun 2, 2023

• pijm

  Public
  PIJM is just matplotlib

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 3, 2022Sep 3, 2022

• brainsss2

  Public
  refactor of the brainsss repo for 2-photon imaging analysis

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•1010 issues•00 pull requests•Updated Aug 9, 2022Aug 9, 2022

• ANTsPy

  Public
  Advanced Normalization Tools in Python

  Python

  •

  Apache License 2.0

  •180180 forks•00 stars•00 issues•00 pull requests•Updated Jun 29, 2022Jun 29, 2022

• multisensory-freezing

  Public
  python scripts for the ball rig with auditory and visual stimuli

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 27, 2021Dec 27, 2021

• lightcrafter

  Public
  Python

  •

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Nov 23, 2021Nov 23, 2021

• pasna-acr-currbio2021

  Public
  Original data and analysis code for Carreira-Rosario et al. "Mechanosensory input during circuit formation shapes Drosophila motor behavior through Patterned Sp…

  drosophiladrosophila-melanogasterdrosophila-larvae+ 1

  drosophiladrosophila-melanogasterdrosophila-larvaedrosophila-brains

  Python

  •

  Apache License 2.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 2, 2021Sep 2, 2021

• fictrac

  Public
  A webcam-based method for tracking spherical motion and generating fictive animal paths.

  C++

  •

  Other

  •4242 forks•11 star•00 issues•00 pull requests•Updated Dec 15, 2020Dec 15, 2020

• containers

  Public
  Commonly used containers and scripts to build them

  Makefile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 21, 2020Oct 21, 2020

• goal-driven-ANNs

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 25, 2020Sep 25, 2020

• dataflow

  Public
  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 10, 2020Mar 10, 2020

• ipp-tools

  Public
  Collection of IPyParallel tools and helper scripts

  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 29, 2017Jun 29, 2017