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@sankaranlab Sankaran Lab

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    Repositories list

    22 repositories

    • BACH2_hbf

      Public
      Contains scripts and supplementary files for the manuscript titled "Human genetics implicates a BACH2-NRF2 axis in fetal hemoglobin activation"
      Jupyter Notebook
      •0•0•0•0•Updated Aug 27, 2026Aug 27, 2026

    • mitodrift

      Public
      Reconstructing single-cell lineage history using mitochondrial mutation drift dynamics
      single-cell-omicslineage-tracing
      single-cell-omicslineage-tracing
      R
      •2•13•0•0•Updated Aug 22, 2026Aug 22, 2026

    • redeemR

      Public
      R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.
      Jupyter Notebook
      •
      MIT License
      •6•7•0•0•Updated Jul 8, 2026Jul 8, 2026

    • Hematopoietic-Isoform-Atlas

      Public
      HTML
      •1•0•0•0•Updated May 20, 2026May 20, 2026

    • DC_multiome

      Public
      R
      •1•0•0•0•Updated Mar 24, 2026Mar 24, 2026

    • WGBS

      Public
      R
      •0•1•0•0•Updated Feb 1, 2026Feb 1, 2026

    • chip_resilience

      Public
      0•0•0•0•Updated Oct 17, 2025Oct 17, 2025

    • perturb_multiome

      Public
      Code to analyze Perturb-multiome experiments
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •0•5•3•0•Updated Feb 12, 2025Feb 12, 2025

    • redeem_reproducibility

      Public
      Analysis reproducibility of Weng et al paper "Deciphering cell states and genealogies of human hematopoiesis"
      Jupyter Notebook
      •1•3•0•0•Updated Jan 22, 2024Jan 22, 2024

    • redeemV

      Public
      Jupyter Notebook
      •5•3•0•0•Updated Jan 22, 2024Jan 22, 2024

    • SCAVENGE

      Public
      SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.
      single-cellnetwork-propagationrandom-walk
      single-cellnetwork-propagationrandom-walkcomplex-traitssingle-cell-analysisfine-mappingscatac-seqdisease-mechanismscell-heterogeneitycell-state
      R
      •
      GNU General Public License v3.0
      •36•95•7•1•Updated Sep 1, 2023Sep 1, 2023

    • hematopoiesis_be_screens

      Public
      Repo for scripts for Martin-Rufino et al. hematopoiesis base editor screens
      0•1•0•0•Updated Aug 14, 2023Aug 14, 2023

    • mecom_var

      Public
      HTML
      •23•25•0•0•Updated Jan 23, 2023Jan 23, 2023

    • SCAVENGE-reproducibility

      Public
      Repository for processed data and scripts for Yu et al. SCAVENGE paper bioRxiv
      R
      •
      GNU General Public License v2.0
      •1•4•0•0•Updated Jun 8, 2022Jun 8, 2022

    • scd-chip

      Public
      Information accompanying Liggett et al. 2021
      MIT License
      •0•1•0•0•Updated Jan 24, 2022Jan 24, 2022

    • Fetal_Hemoglobin_model

      Public
      R
      •0•0•0•0•Updated Feb 1, 2021Feb 1, 2021

    • mpn-gwas

      Public
      Analysis repository for MPN GWAS manuscript
      R
      •3•4•0•0•Updated Oct 14, 2020Oct 14, 2020

    • erythroid-profiling

      Public
      Analysis repository for Erythropoiesis ATAC/RNA profiling paper
      rna-seqepigeneticsatac-seq
      rna-seqepigeneticsatac-seqerythropoesis
      HTML
      •4•3•0•0•Updated Feb 10, 2020Feb 10, 2020

    • mito-genotyping

      Public
      Repo for scripts for Ludwig et al mtDNA genotyping
      R
      •9•16•0•0•Updated Nov 22, 2019Nov 22, 2019

    • translation-regulation-bcl11a

      Public
      Repository for analyses related to BCL11A translational control
      R
      •0•1•0•0•Updated Oct 7, 2019Oct 7, 2019

    • shRNA_screen

      Public
      Code and data repository for analysis of RBC shRNA screen
      Jupyter Notebook
      •1•0•0•0•Updated Apr 8, 2019Apr 8, 2019

    • singlecell_bloodtraits

      Public
      Data/analysis repository for "Interrogation of human hematopoiesis..." paper
      R
      •10•1•0•0•Updated Oct 28, 2018Oct 28, 2018
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