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  1. BactPrep BactPrep Public

    Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)

    Python 12 2

  2. BactAsm BactAsm Public

    Workflow designed for Download, QC, Assemble, Variant calling, and Annotate bacterial WGS in batch

    Python 2 1

  3. salvadorlab/MetagenomicsToolsEvaluation salvadorlab/MetagenomicsToolsEvaluation Public

    This repository contains scripts to run 9 different shotgun metagenomics profiling software on a rat tissue dataset as well as scripts for their downstream analysis (import into R, alpha/beta diver…

    Shell 3

  4. sc_workflow sc_workflow Public

    Jupyter Notebook