ai-assisted-research

GitHub template for autonomous strategic research using Claude Code

Local-first, user-governed Research Room for structured AI-assisted research deliberation.

Agent skills for systematic review, meta-analysis, umbrella review, and AI-assisted evidence synthesis.

Open-source self-hosted AI research assistant, RAG knowledge base, web research agent, multi-agent AI, MCP server, document chat, live web search, and AI automation platform with cited answers and report generation.

A small, docs-first workflow for AI-assisted research that keeps claims, sources, uncertainty, review findings and human decisions inspectable.

A file-based governance harness that turns loose research ideas into proposals that hold up. Makes three things checkable: which page a claim rests on, what would refute it, and what the AI just changed. Human stays the sole adjudicator. Bilingual (EN / 繁中).

AI-assisted CP2K and VASP workflows for chiral Eu(III) halide crystals, structure optimization, and reproducibility.

Provide one research direction, it will generate entire project and complete research paper for you. Can generate many more types of documents!

Human-led, evidence-gated full-cycle research execution for Codex and Claude Code · 人类主导的科研全流程辅助工具

A claim-centric, temporally-aware LLM wiki for long-term scientific literature management.

Safe, repeatable Codex-assisted family-history research workflows for FamilySearch.org

Open research repository for inclusive charm semileptonic decays, HQET/OPE, and reproducible thesis-source workflows.

Formal Verification of Whittaker-Type Zero-Invariant Fields and Receiver Symmetry Breaking in Lean 4 and SystemVerilog.

A Topological Proof by Contradiction of Non-Trivial Zeros via Spectral Rigidity in Lean 4 & Comparator.

Geometric Exclusion of Smooth Solutions to Navier-Stokes Equations at Stationary Right-Angles under No-Slip Boundary Conditions in Lean 4.

基于 PubMed + AI 的个人定制研究知识库，快速了解领域近期研究；Claim 级检索、研究方向整理与可编辑学习笔记。Personalized research knowledge base: recent research, traceable claims & notes. macOS Beta releases only.

Agent Lit Review is a local, agent-assisted workflow for turning research PDFs into structured Obsidian literature notes. It processes one source at a time to reduce context drift and organizes notes for theme scanning without requiring a separate literature-review platform or paid API key.

Machine-Certified Absolute Stability for High-Dimensional Lur'e Systems via Lean 4 & Comparator.

Generative AI is the best research tool we have available today - it also messes up a lot. This harness consists of the deterministic controls to perform AI-assisted research quickly, accurately and honestly.

Reproducible re-analysis on two human EPIC datasets asking whether partial epigenetic reprogramming reverts the causal-damage (DamAge) or the adaptive (AdaptAge) methylation layer — the two layers dissociate, and the dissociation replicates.