dbcan

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.

泰迪杯数据挖掘C题-轨迹挖掘

A lightweight rewrite of run_dbcan for better multithread performance

A tool that summarises run_dbcan (CAZyme) output into binary matrix (presence and absence) useful for data visualisation

This is a banking customer segmentation capstone project for Crystal System.

In silico CAZyme profiling of the glycoproteome of B. longum. It maps the complex multidomain Glycoside Hydrolase (GH) architectures and syntenic gene clusters that drive host-secreted mucin foraging, recalcitrant glycan depolymerization, and symbiotic cross-feeding.

Provide Python codes to handle database downloads

Comparative genomic profiling of Carbohydrate-Active Enzyme (CAZyme) repertoires and Polysaccharide Utilization Loci (PULs) delineating the complex glycan foraging capacities of intestinal Bacteroides xylanisolvens versus Escherichia coli K12.

Pipeline for discovering secreted multidomain fungal CAZymes using SignalP 6, DeepTMHMM, dbCAN, CD-HIT and homology-based candidate prioritization.

Developed a bioinformatics workflow for the classification and functional characterization of the CAZy GH5 glycoside hydrolase family, a highly diverse enzyme family involved in carbohydrate metabolism.