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LCarioti / bacterial-hybrid-snakemake

reproducible Snakemake pipeline for bacterial hybrid assembly.

python snakemake nanopore illumina genome-assembly masurca snakemake-workflow hybrid-assembly quast polca snakemake-pipeline flye bacterial-genomics filtlong

Updated Jun 30, 2026
Python

LCarioti / bacterial-hybrid-assembly

Star

Automated Bash pipeline for hybrid de novo bacterial genome assembly, combining Oxford Nanopore (ONT) and Illumina reads with QC, polishing (POLCA), and evaluation (QUAST).

bash bioinformatics pipeline illumina genome-assembly masurca nanopore-sequencing hybrid-assembly quast flye bacterial-genomics bash-pipeline filtlong

Updated Jun 30, 2026
Shell

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