haplogroup

HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.

Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data

Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups. LGPLv3 - use freely but share improvements.

El genoma pequeño - analysis workflow for "the little genome." This repository holds a computational workflow to analyze the mitochondrial genome.

Simple genetic data analysis for GEDKeeper

A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods

Sample size and power for association studies involving mitochondrial DNA haplogroups -

This python script helps you predict your Y-haplogroup offline.

An open, encyclopedic reference for human haplogroups.

Read your own raw DNA file in your browser: runs of homozygosity, maternal haplogroup, and an embeddable ancestry module. No server, no upload, no build.

Methods overview with scripts looking at mtDNA and haplogroup association with CPTAC LUAD study.

Personal genomics analysis toolkit: ingest consumer DNA raw data, impute against 1000 Genomes, and produce an evidence-graded ledger of pharmacogenomic, carrier-screening, trait, polygenic-score, and haplogroup findings — all locally.

A much needed now easy to read and parseable machine readable data set resource for all of the historical ISOGG Y-Chromosome data

Programa Delfin 2022

GATK Best Practices variant calling on human chrY and mtDNA, ending in paternal and maternal haplogroup assignment cross-validated by two independent tools. Reproduces published metrics to within 0.7%.

Phylogeographic text-mining platform

Tree Convert helps you to compare ISOGG and YFull haplogroup resolutions