Simple code for PS detection, can be used on several files
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Feb 15, 2018 - Shell
#
hyphy
Here are 12 public repositories matching this topic...
Parse output JSON files from the Hyphy AbsREL package for positive selection.
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Oct 17, 2023 - R
A repository for showcasing my knowledge of the Hyphy programming language, and continuing to learn the language.
knowledge article gplv3 learn md txt hyphy gpl3 seanpm2001 seanpm2001-education seanpm2001-learn learn-hyphy learn-hyphy-lang learn-hyphy-language hyphy-lang hyphy-language hyphy-collection
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Sep 15, 2022 - HyPhy
🌳️🌐️#️⃣️ The Bliss Browser HyPhy language support module, allowing HyPhy documents to be written in and ran within the browser.
browser web-development gplv3 web-browser md txt hyphy gpl3 hyphy-lang hyphy-language bliss-browser bliss-browser-development bliss-browser-languages bliss-browser-language-support bliss-browser-languagesupport bliss-browser-hyphy
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Feb 25, 2023 - HyPhy
🧠️🖥️2️⃣️0️⃣️0️⃣️1️⃣️💾️📜️ The sourceCode:HyPhy category for AI2001, containing HyPhy programming language datasets
ai gplv3 artificial-intelligence dataset r-language md txt hyphy gpl3 hyphy-lang hyphy-language rmarkdown-language ai2001 ai-2001 ai2001-dataset ai-2001-dataset ai2001-development ai-2001-development source-code-dataset hyphy-sc-dataset
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Jun 5, 2023 - R
The HyPhy Programming language IDE submodule for SNU Programming Tools.
web-development programming web-ide gplv3 ide md txt snu hyphy gpl3 snu2d-programmingtools snu-2d snu-programming-tools snu-2d-programmingtools snu-development snu-2d-programming-tools snuprogrammingtools snu2dprogrammingtools hyphy-lang hyphy-language
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Sep 15, 2022 - HyPhy
Workflow for estimating HIV outgrowth virus integration dates from Primer-ID sequencing data using HyPhy and HPC automation.
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Aug 30, 2025 - HyPhy
Codon-aware phylogenetic pipeline with Snakemake
python snakemake meme phylogeny iq-tree hyphy fel mafft phylogenetic-analysis snakemake-workflow snakemake-pipeline
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Jul 2, 2026 - Python
A GUI-based bioinformatics pipeline for preparing, running, and summarizing HyPhy evolutionary selection analyses.
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Aug 14, 2026 - Python
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