introns

Gene prediction using empirically determined introns

This pipeline infers exon functional annotations using coordinates from a .gff file and derives corresponding intron coordinates along with relevant annotations. Users can optionally specify the length of intronic fragments to extract. The pipeline is suited for splicing code analyses.

A database of introns and alternative splicing events across human tissues

A Python-based bioinformatics project that performs DNA sequence analysis including nucleotide mutation conversion, DNA to RNA transcription, mRNA translation into amino acids, AT content calculation, and exon-intron splicing operations.

A tool to determine locations of potential novel intronic splicing

Creating so called sequence logos for UTRs and introns of genes in the human genome

Working with genomic introns

Scripts used to prepare the "Self-splicing introns in genes of Bastillevirinae bacteriophages" paper

Intron mapping for genes linked to psychiatric disorders from Cell 2025 MPRA & CROP-seq data

Manuscript data and code repository