ligand-receptor

NicheNet: predict active ligand-target links between interacting cells

LIANA+: an all-in-one framework for cell-cell communication

LIANA: a LIgand-receptor ANalysis frAmework

MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

DrugHIVE: Structure-based drug design with a deep hierarchical generative model

A manually curated database of literature-supported ligand-receptor interactions in human and mouse

Cell-Cell Interaction Discovery in Single Cell RNA Sequencing

Intercellular communication analysis for scRNA-seq data

LIANA x Tensor-cell2cell Protocols

R package for non-peptide ligand activity and receptor-communication inference from transcriptomics

Ligand-Receptor Analysis for scRNAseq data

A quick and dirty virtual screening task for potential ligands of Flavobacterium johnsoniae Tyrosine Ammonia Lyase (FjTAL)

Scenario-aware four-dimensional benchmark for spatial cell-cell communication inference.

[Donor] Temporal Cell-Cell Interaction Analysis in scRNA-seq | 伪时序细胞通讯

Interpretable spatial graph framework integrating pathway and ligand–receptor priors with tissue architecture. Generates pathway maps and H&E overlays that reveal how tumors organize and rewire signaling in space.

A geometry-aware framework for prioritizing biologically meaningful ligand–receptor interactions in spatial transcriptomics.

FAIR single-cell RNA-seq pipeline mapping nerve–tumour–immune ligand–receptor crosstalk in glioblastoma across 170 donors (CELLxGENE Census, two sequencing-depth arms). Compartment integrity enforced as build gates against a held-out annotation. Snakemake + scvi-tools + scanpy + LIANA + marimo.

Systems immunology workflow for reconstructing cell–cell communication networks in lupus nephritis using CellChat and single-cell RNA sequencing.

Validate market niches for Amazon KDP, YouTube, and product research with this browser-based analysis tool.