metabolome

Matrix dissimilarity from the differences of Moments and sparsity

Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data

MetEvolSim (Metabolome Evolution Simulator). A Python package to simulate the long-term evolution of metabolic levels.

Analyze enzyme regulation with metabolome data.

MetaboFlow: Untargeted LC-MS Metabolomics Quad-Workflow Pipeline | 非靶向代谢组学四工作流集成分析系统 | 4 pathway enrichment workflows (ORA+QEA) | Nature-quality figures | R-based | tidymass + MetaboAnalystR + limma

Multi-omics data simulator for holobiomes - simulates host transcriptome, metabolome and physiology, microbiome and microbial transcriptome as well as metabolome.

IMPFD v1.0 — Fungal Development Multi-Omics Integrated Analysis Platform | 真菌发育多组学整合分析平台。自动化整合转录组·代谢组·蛋白质组·空间转录组·表观转录组分析。

This repository contains code for the study evaluating the concordance between 16S rRNA-based functional predictions (PICRUSt2, Tax4Fun2) and measured stool metabolomics.

Analysis of Multiple Circadian/Longitudinal Datasets

Implementation of an ML algorithm, DBSCAN, on biological data.

Longitudinal OSA Experiments - Lesion, Microbiome, Metabolome

MetaboMatch is a Python package and command-line interface (CLI) tool designed to match metabolomics compound names against the Human Metabolome Database (HMDB)